Variant report

Variant	rs16956334
Chromosome Location	chr16:82089570-82089571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr16:82089501-82090241	HepG2	liver:	n/a	n/a
2	STAT3	chr16:82088986-82090561	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
3	FOXA2	chr16:82089521-82090591	HepG2	liver:	n/a	chr16:82090391-82090403
4	SP1	chr16:82089522-82090282	HepG2	liver:	n/a	n/a
5	MYBL2	chr16:82089513-82090308	HepG2	liver:	n/a	n/a
6	FOXA1	chr16:82089530-82090206	HepG2	liver:	n/a	n/a
7	POLR2A	chr16:82089161-82090615	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr16:82088903-82090381	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr16:82088990-82090528	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
10	HDAC2	chr16:82089532-82090202	HepG2	liver:	n/a	n/a
11	FOS	chr16:82089050-82090527	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
12	STAT3	chr16:82089045-82090528	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
13	FOS	chr16:82088988-82090534	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
14	EP300	chr16:82089501-82090323	HepG2	liver:	n/a	n/a
15	STAT3	chr16:82089217-82090573	MCF10A-Er-Src	breast:	n/a	chr16:82089760-82089768
16	MYC	chr16:82088969-82090189	MCF10A-Er-Src	breast:	n/a	n/a
17	STAT3	chr16:82089093-82090306	MCF10A-Er-Src	breast:	n/a	chr16:82089123-82089131 chr16:82089760-82089768
18	TEAD4	chr16:82089371-82090387	HepG2	liver:	n/a	n/a
19	FOXA1	chr16:82089535-82090444	HepG2	liver:	n/a	chr16:82090391-82090403
20	FOS	chr16:82088963-82090103	MCF10A-Er-Src	breast:	n/a	chr16:82089434-82089445
21	MYC	chr16:82088957-82090394	MCF10A-Er-Src	breast:	n/a	n/a
22	ZEB1	chr16:82089535-82090372	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82087347..82089906-chr16:82091633..82093166,2	K562	blood:

Variant related genes	Relation type
HSD17B2	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1981880	1.00[AMR][1000 genomes]
rs72547421	1.00[AMR][1000 genomes]
rs8191075	1.00[AMR][1000 genomes]
rs8191093	1.00[AMR][1000 genomes]
rs8191110	1.00[AMR][1000 genomes]
rs8191118	1.00[AMR][1000 genomes]
rs8191132	1.00[AMR][1000 genomes]
rs8191143	1.00[AMR][1000 genomes]
rs8191216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
3	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:82086200-82103800	Weak transcription	Gastric	stomach
5	chr16:82087800-82089600	Weak transcription	Stomach Mucosa	stomach
6	chr16:82088800-82089600	Enhancers	Pancreas	Pancrea
7	chr16:82088800-82089800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:82088800-82090400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:82088800-82090600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:82088800-82090800	Enhancers	HMEC	breast
11	chr16:82089000-82090200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr16:82089000-82090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr16:82089000-82090600	Enhancers	NHEK	skin
14	chr16:82089000-82090800	Enhancers	Fetal Intestine Small	intestine
15	chr16:82089000-82091400	Weak transcription	Placenta	Placenta
16	chr16:82089200-82089600	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr16:82089200-82089600	Flanking Active TSS	HepG2	liver
18	chr16:82089200-82089800	Flanking Active TSS	Liver	Liver
19	chr16:82089200-82090000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr16:82089200-82090400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr16:82089400-82089600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr16:82089400-82089600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr16:82089400-82090200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr16:82089400-82090400	Enhancers	Fetal Lung	lung
25	chr16:82089400-82091000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr16:82089400-82093800	Weak transcription	Lung	lung
27	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum

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