Variant report

Variant	rs8191143
Chromosome Location	chr16:82102718-82102719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16956334	1.00[AMR][1000 genomes]
rs1981880	1.00[AMR][1000 genomes]
rs72547421	1.00[AMR][1000 genomes]
rs8191075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191093	1.00[AMR][1000 genomes]
rs8191110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191216	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82086200-82103800	Weak transcription	Gastric	stomach
2	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
4	chr16:82094600-82106200	Weak transcription	Lung	lung
5	chr16:82096400-82104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:82097000-82104400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:82097400-82104000	Weak transcription	NHDF-Ad	bronchial
8	chr16:82097400-82116800	Weak transcription	Colonic Mucosa	Colon
9	chr16:82097600-82103800	Weak transcription	Esophagus	oesophagus
10	chr16:82097800-82103400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:82099600-82108800	Strong transcription	Placenta	Placenta
12	chr16:82101000-82104400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr16:82101000-82108400	Strong transcription	Duodenum Mucosa	Duodenum
14	chr16:82101400-82103600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr16:82101400-82104200	Weak transcription	Fetal Stomach	stomach
16	chr16:82101600-82104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:82101600-82104600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:82101800-82102800	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:82101800-82103000	Strong transcription	Liver	Liver
20	chr16:82101800-82103600	Weak transcription	HSMMtube	muscle
21	chr16:82102000-82104400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr16:82102000-82104400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr16:82102200-82103600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr16:82102200-82104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:82102400-82107200	Strong transcription	Fetal Intestine Small	intestine
26	chr16:82102400-82107600	Strong transcription	Fetal Intestine Large	intestine
27	chr16:82102600-82108200	Strong transcription	HepG2	liver

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