Variant report

Variant	rs16956613
Chromosome Location	chr16:82209217-82209218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82207842..82210813-chr16:82220344..82222897,2	MCF-7	breast:
2	chr16:82202997..82205982-chr16:82208138..82211154,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HSD17B2-1	chr16:82209037-82209408	ENSG00000261029.1

Variant related genes	Relation type
ENSG00000261029	Chromatin interaction
ENSG00000135698	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs13335963	0.84[EUR][1000 genomes]
rs13337285	0.84[EUR][1000 genomes]
rs56704220	0.88[EUR][1000 genomes]
rs57035666	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57080322	0.88[EUR][1000 genomes]
rs57573650	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57899428	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57928709	0.81[AMR][1000 genomes]
rs60776905	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61198904	0.81[AMR][1000 genomes]
rs62047176	0.81[AMR][1000 genomes]
rs6564988	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6564990	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs6564991	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6564992	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6564993	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6564994	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6564995	0.84[EUR][1000 genomes]
rs7184881	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7186070	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7191392	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7195032	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7196909	1.00[CEU][hapmap];0.89[GIH][hapmap];0.84[EUR][1000 genomes]
rs7200987	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7202424	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73591440	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73591450	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73591453	0.87[AMR][1000 genomes]
rs73591454	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73591483	0.84[EUR][1000 genomes]
rs73591486	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73591491	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73591498	0.81[AMR][1000 genomes]
rs73593205	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73593211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73593219	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73593240	0.81[AMR][1000 genomes]
rs73593254	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73593256	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73593257	0.96[EUR][1000 genomes]
rs73593260	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8050837	1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs8053704	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8056380	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8057418	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8057629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8060652	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8061937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv518129	chr16:82188173-82228076	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv1844598	chr16:82195234-82429790	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv1847414	chr16:82195234-82429790	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv532600	chr16:82197554-82314289	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv907015	chr16:82203758-82284056	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82209000-82209800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr16:82209000-82209800	Enhancers	Monocytes-CD14+_RO01746	blood

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