Variant report

Variant	rs7196909
Chromosome Location	chr16:82194842-82194843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:82192940..82199910-chr16:82200069..82205182,12	MCF-7	breast:
2	chr16:82185992..82189074-chr16:82193243..82196142,4	MCF-7	breast:
3	chr16:82192311..82195081-chr16:82198371..82200683,2	K562	blood:
4	chr16:82187699..82189970-chr16:82194493..82196647,2	MCF-7	breast:
5	chr16:82185306..82186813-chr16:82193802..82195374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261029	Chromatin interaction
ENSG00000135698	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13335963	1.00[EUR][1000 genomes]
rs13337285	1.00[EUR][1000 genomes]
rs16956613	1.00[CEU][hapmap];0.89[GIH][hapmap];0.84[EUR][1000 genomes]
rs56704220	0.88[EUR][1000 genomes]
rs57035666	0.88[EUR][1000 genomes]
rs57080322	0.88[EUR][1000 genomes]
rs57573650	0.84[EUR][1000 genomes]
rs57899428	0.92[EUR][1000 genomes]
rs60776905	0.92[EUR][1000 genomes]
rs6564988	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6564990	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6564991	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6564992	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6564993	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6564994	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6564995	1.00[EUR][1000 genomes]
rs7184881	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7186070	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7191392	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7195032	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7200987	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7202424	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73591440	0.96[EUR][1000 genomes]
rs73591450	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591453	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73591454	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591483	1.00[EUR][1000 genomes]
rs73591486	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73591491	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73593205	0.92[EUR][1000 genomes]
rs73593211	0.92[EUR][1000 genomes]
rs73593219	0.92[EUR][1000 genomes]
rs73593254	0.80[EUR][1000 genomes]
rs73593257	0.80[EUR][1000 genomes]
rs73593260	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8050837	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8053704	0.84[EUR][1000 genomes]
rs8056380	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8057418	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8057629	0.88[EUR][1000 genomes]
rs8060652	0.85[EUR][1000 genomes]
rs8061937	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv457578	chr16:82136566-82197883	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv573366	chr16:82136566-82197883	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907013	chr16:82154619-82196808	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv518129	chr16:82188173-82228076	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	nsv833302	chr16:82188351-82363863	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82168000-82195400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:82168400-82195600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:82168600-82195600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr16:82170800-82195800	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:82172800-82199200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr16:82173400-82203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:82177000-82195200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr16:82179200-82196000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr16:82179800-82196200	Weak transcription	Fetal Heart	heart
10	chr16:82180800-82195600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:82181200-82195800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr16:82181200-82196600	Weak transcription	Small Intestine	intestine
13	chr16:82181600-82195400	Weak transcription	GM12878-XiMat	blood
14	chr16:82186000-82199200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:82186000-82201600	Strong transcription	Primary T cells from cord blood	blood
16	chr16:82186400-82202800	Weak transcription	Psoas Muscle	Psoas
17	chr16:82186600-82202600	Weak transcription	Stomach Mucosa	stomach
18	chr16:82187400-82200600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr16:82188400-82202200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr16:82189800-82199200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:82190200-82195800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:82191000-82201000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr16:82191200-82199200	Strong transcription	Primary B cells from cord blood	blood
24	chr16:82191200-82200800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr16:82191200-82201000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr16:82191400-82201000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr16:82191800-82198800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr16:82192000-82200400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:82192400-82200800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr16:82192600-82198000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr16:82192600-82198200	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr16:82192600-82201200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:82193000-82199200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr16:82193000-82200400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr16:82193000-82201600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr16:82193200-82197400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr16:82193200-82197800	Strong transcription	A549	lung
38	chr16:82193200-82198000	Strong transcription	Brain Anterior Caudate	brain
39	chr16:82193200-82198200	Strong transcription	HSMMtube	muscle
40	chr16:82193200-82198400	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr16:82193200-82199800	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr16:82193200-82200000	Strong transcription	Primary B cells from peripheral blood	blood
43	chr16:82193200-82200400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr16:82193200-82200800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr16:82193200-82200800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr16:82193200-82201000	Strong transcription	Fetal Intestine Large	intestine
47	chr16:82193200-82201800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr16:82193400-82195000	Genic enhancers	Placenta	Placenta
49	chr16:82193400-82196400	Strong transcription	HepG2	liver
50	chr16:82193400-82196600	Strong transcription	Spleen	Spleen

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