Variant report

Variant	rs1695770
Chromosome Location	chr14:65215166-65215167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65202287..65204221-chr14:65212504..65215467,2	MCF-7	breast:
2	chr14:65206564..65209112-chr14:65212636..65215493,2	K562	blood:
3	chr14:65173952..65176818-chr14:65213044..65215895,2	MCF-7	breast:
4	chr14:65163822..65165712-chr14:65213676..65215408,2	MCF-7	breast:
5	chr14:65147226..65148769-chr14:65215008..65216811,2	MCF-7	breast:
6	chr14:64968824..64971792-chr14:65213075..65215699,2	MCF-7	breast:
7	chr14:65206432..65210320-chr14:65210807..65215364,7	MCF-7	breast:
8	chr14:65205058..65207899-chr14:65213819..65216284,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10138525	0.86[JPT][hapmap]
rs229677	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs57127480	0.86[ASN][1000 genomes]
rs57421986	0.91[ASN][1000 genomes]
rs59562812	0.86[ASN][1000 genomes]
rs61742295	0.91[ASN][1000 genomes]
rs7143124	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs7161278	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv902023	chr14:65200821-65243885	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv902024	chr14:65200821-65244950	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65194200-65216200	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:65201000-65221800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:65202200-65217400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:65202800-65215200	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr14:65203800-65216800	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr14:65204000-65215200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:65204000-65217200	Strong transcription	NHEK	skin
8	chr14:65204200-65216800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:65204200-65217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:65204400-65217000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:65204600-65215400	Strong transcription	Liver	Liver
12	chr14:65204600-65216800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:65204600-65219800	Strong transcription	Fetal Intestine Small	intestine
14	chr14:65205400-65216800	Strong transcription	Esophagus	oesophagus
15	chr14:65208600-65219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:65208600-65222400	Weak transcription	Stomach Mucosa	stomach
17	chr14:65209800-65223600	Weak transcription	Psoas Muscle	Psoas
18	chr14:65210000-65215400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr14:65211200-65216000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:65211200-65217400	Strong transcription	Fetal Intestine Large	intestine
21	chr14:65211200-65219000	Weak transcription	Small Intestine	intestine
22	chr14:65211200-65228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:65211800-65215400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr14:65212000-65224400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:65212200-65215400	Strong transcription	Colonic Mucosa	Colon
26	chr14:65212400-65216000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:65212400-65217400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:65212600-65215400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:65212600-65217000	Strong transcription	A549	lung
30	chr14:65212800-65218800	Weak transcription	Brain Germinal Matrix	brain
31	chr14:65212800-65224200	Weak transcription	Aorta	Aorta
32	chr14:65213000-65215400	Strong transcription	Gastric	stomach
33	chr14:65213000-65217000	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr14:65213200-65217400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:65213400-65215200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr14:65213400-65215400	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr14:65213400-65217600	Strong transcription	Fetal Stomach	stomach
38	chr14:65213400-65218200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr14:65213600-65216200	Strong transcription	Fetal Brain Female	brain
40	chr14:65213600-65216600	Strong transcription	Pancreas	Pancrea
41	chr14:65213600-65217000	Strong transcription	Placenta	Placenta
42	chr14:65213600-65218200	Weak transcription	Lung	lung
43	chr14:65213600-65219600	Strong transcription	HMEC	breast
44	chr14:65213800-65217000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr14:65213800-65217200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr14:65213800-65219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr14:65213800-65222200	Weak transcription	Colon Smooth Muscle	Colon
48	chr14:65214000-65215400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:65214000-65215400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
50	chr14:65214000-65215600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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