Variant report

Variant	rs10138525
Chromosome Location	chr14:65161218-65161219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65160629..65162751-chr14:65201298..65203943,2	MCF-7	breast:
2	chr14:64969883..64973217-chr14:65158643..65161451,4	MCF-7	breast:
3	chr14:65154198..65155893-chr14:65160507..65162048,2	K562	blood:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1695770	0.86[JPT][hapmap]
rs229677	1.00[JPT][hapmap]
rs57127480	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57421986	0.89[EUR][1000 genomes]
rs59562812	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7143124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161278	0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73271700	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65155600-65165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:65155800-65163000	Weak transcription	Lung	lung
4	chr14:65156000-65163000	Weak transcription	Pancreas	Pancrea
5	chr14:65156000-65165000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr14:65156000-65165200	Weak transcription	Fetal Thymus	thymus
7	chr14:65156600-65162800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr14:65156800-65161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:65156800-65162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:65156800-65162800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:65156800-65162800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:65156800-65163000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:65157800-65161400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr14:65158800-65164600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr14:65159000-65161600	Enhancers	Fetal Muscle Leg	muscle
16	chr14:65159000-65161600	Enhancers	Left Ventricle	heart
17	chr14:65159000-65161800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:65159000-65161800	Enhancers	Right Atrium	heart
19	chr14:65159000-65162000	Enhancers	Brain Angular Gyrus	brain
20	chr14:65159000-65162000	Enhancers	Brain Anterior Caudate	brain
21	chr14:65159000-65162000	Enhancers	Brain Cingulate Gyrus	brain
22	chr14:65159000-65162000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:65159000-65162400	Enhancers	Brain Substantia Nigra	brain
24	chr14:65159000-65166000	Enhancers	Brain Hippocampus Middle	brain
25	chr14:65159200-65161800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:65159200-65161800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:65159200-65163000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:65159200-65163600	Enhancers	Fetal Heart	heart
29	chr14:65159600-65161400	Enhancers	Psoas Muscle	Psoas
30	chr14:65159600-65163000	Weak transcription	Colonic Mucosa	Colon
31	chr14:65159800-65163000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:65160000-65162800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr14:65160000-65163000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:65160000-65165600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:65160000-65165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr14:65160000-65168400	Weak transcription	HMEC	breast
37	chr14:65160000-65168600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:65160200-65165400	Weak transcription	NHEK	skin
39	chr14:65160600-65162800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr14:65160600-65163000	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:65160800-65161600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:65160800-65162200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:65160800-65163000	Weak transcription	Aorta	Aorta
44	chr14:65160800-65164800	Weak transcription	Primary B cells from cord blood	blood
45	chr14:65160800-65166600	Enhancers	Fetal Intestine Small	intestine
46	chr14:65161000-65161800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:65161000-65161800	Weak transcription	Right Ventricle	heart
48	chr14:65161000-65162000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:65161000-65163000	Weak transcription	Fetal Kidney	kidney
50	chr14:65161000-65163000	Weak transcription	Spleen	Spleen

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