Variant report

Variant	rs73271700
Chromosome Location	chr14:65173236-65173237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64972763..64974388-chr14:65172588..65174166,2	MCF-7	breast:
2	chr14:65168373..65176902-chr14:65220182..65231670,21	MCF-7	breast:
3	chr14:65168529..65178400-chr14:65179583..65195815,52	MCF-7	breast:
4	chr14:65171254..65174488-chr14:65196605..65199995,3	MCF-7	breast:
5	chr14:64969978..64971737-chr14:65172793..65174564,2	MCF-7	breast:
6	chr14:65170433..65175465-chr14:65207632..65214317,8	MCF-7	breast:
7	chr14:65168335..65178043-chr14:65220677..65234710,31	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000126822	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10130553	1.00[AMR][1000 genomes]
rs10133196	1.00[AMR][1000 genomes]
rs10135368	1.00[AMR][1000 genomes]
rs10138525	0.87[AFR][1000 genomes]
rs12101185	1.00[AMR][1000 genomes]
rs17101973	1.00[AMR][1000 genomes]
rs41381946	1.00[AMR][1000 genomes]
rs41456047	1.00[AMR][1000 genomes]
rs55845128	1.00[AMR][1000 genomes]
rs58703532	1.00[AMR][1000 genomes]
rs60242081	1.00[AMR][1000 genomes]
rs74056006	1.00[AMR][1000 genomes]
rs74056027	1.00[AMR][1000 genomes]
rs74056031	1.00[AMR][1000 genomes]
rs74056080	1.00[AMR][1000 genomes]
rs74056321	1.00[AMR][1000 genomes]
rs74056335	1.00[AMR][1000 genomes]
rs74056355	1.00[AMR][1000 genomes]
rs74056368	1.00[AMR][1000 genomes]
rs74056389	1.00[AMR][1000 genomes]
rs74056393	1.00[AMR][1000 genomes]
rs74056398	1.00[AMR][1000 genomes]
rs74056399	1.00[AMR][1000 genomes]
rs74056402	1.00[AMR][1000 genomes]
rs74056451	1.00[AMR][1000 genomes]
rs74056453	1.00[AMR][1000 genomes]
rs74056462	1.00[AMR][1000 genomes]
rs74058205	1.00[AMR][1000 genomes]
rs74058206	1.00[AMR][1000 genomes]
rs74058207	1.00[AMR][1000 genomes]
rs74058208	1.00[AMR][1000 genomes]
rs74058211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65169800-65173600	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr14:65170000-65176600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr14:65170600-65173400	Active TSS	Aorta	Aorta
4	chr14:65170800-65173600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65170800-65174200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr14:65170800-65174400	Active TSS	Brain Angular Gyrus	brain
7	chr14:65171400-65173400	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr14:65171600-65174200	Flanking Active TSS	Fetal Muscle Leg	muscle
9	chr14:65171800-65173400	Flanking Active TSS	Fetal Muscle Trunk	muscle
10	chr14:65171800-65173600	Flanking Active TSS	Duodenum Mucosa	Duodenum
11	chr14:65171800-65177200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr14:65172000-65173400	Flanking Active TSS	Fetal Stomach	stomach
13	chr14:65172000-65173600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:65172000-65173600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr14:65172000-65173800	Flanking Active TSS	Liver	Liver
16	chr14:65172000-65174000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:65172200-65173400	Flanking Active TSS	Fetal Lung	lung
18	chr14:65172200-65173600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:65172200-65173600	Flanking Active TSS	Hela-S3	cervix
20	chr14:65172200-65173800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
21	chr14:65172200-65174600	Flanking Active TSS	HepG2	liver
22	chr14:65172400-65173400	Flanking Active TSS	HMEC	breast
23	chr14:65172400-65173600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:65172400-65173600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:65172400-65173600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr14:65172400-65173800	Flanking Active TSS	Fetal Intestine Large	intestine
27	chr14:65172400-65174000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:65172400-65174000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65172400-65174000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:65172400-65174000	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr14:65172400-65174000	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr14:65172400-65174800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr14:65172400-65174800	Weak transcription	Lung	lung
34	chr14:65172400-65175200	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:65172400-65176800	Enhancers	Small Intestine	intestine
36	chr14:65172600-65173400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr14:65172600-65173400	Flanking Active TSS	Brain Substantia Nigra	brain
38	chr14:65172600-65173400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr14:65172600-65173600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
40	chr14:65172600-65173600	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr14:65172600-65173600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr14:65172600-65173800	Flanking Active TSS	A549	lung
43	chr14:65172600-65174000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:65172600-65174000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:65172600-65174000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:65172600-65174000	Flanking Active TSS	Colon Smooth Muscle	Colon
47	chr14:65172600-65174000	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
48	chr14:65172600-65174000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr14:65172600-65174400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr14:65172600-65174400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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