Variant report

Variant	rs41456047
Chromosome Location	chr14:65184505-65184506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65174479..65176413-chr14:65184169..65186446,2	K562	blood:
2	chr14:65182060..65184778-chr14:65193626..65195204,2	MCF-7	breast:
3	chr14:65182239..65187467-chr14:65224192..65227180,5	MCF-7	breast:
4	chr14:65005659..65008435-chr14:65184165..65188343,3	MCF-7	breast:
5	chr14:65182677..65185308-chr14:65185864..65187831,2	K562	blood:
6	chr14:65183084..65185968-chr14:65190342..65192144,2	MCF-7	breast:
7	chr14:65182089..65184579-chr17:56735427..56737883,2	MCF-7	breast:
8	chr14:65168529..65178400-chr14:65179583..65195815,52	MCF-7	breast:
9	chr14:65006473..65008422-chr14:65184349..65186300,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126822	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000070182	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10130553	1.00[AMR][1000 genomes]
rs10133196	1.00[AMR][1000 genomes]
rs10135368	0.82[ASW][hapmap];1.00[AMR][1000 genomes]
rs10138311	1.00[ASN][1000 genomes]
rs12101185	1.00[AMR][1000 genomes]
rs17101973	1.00[AMR][1000 genomes]
rs17102000	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17102003	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17102005	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs17102007	1.00[ASN][1000 genomes]
rs17102018	1.00[GIH][hapmap]
rs17102019	1.00[GIH][hapmap]
rs41381946	1.00[AMR][1000 genomes]
rs4453374	1.00[ASN][1000 genomes]
rs55845128	1.00[AMR][1000 genomes]
rs58703532	1.00[AMR][1000 genomes]
rs59115111	1.00[ASN][1000 genomes]
rs60242081	1.00[AMR][1000 genomes]
rs73271697	1.00[ASN][1000 genomes]
rs73271700	1.00[AMR][1000 genomes]
rs74056006	1.00[AMR][1000 genomes]
rs74056027	1.00[AMR][1000 genomes]
rs74056031	1.00[AMR][1000 genomes]
rs74056080	1.00[AMR][1000 genomes]
rs74056321	1.00[AMR][1000 genomes]
rs74056335	1.00[AMR][1000 genomes]
rs74056355	1.00[AMR][1000 genomes]
rs74056368	1.00[AMR][1000 genomes]
rs74056388	1.00[ASN][1000 genomes]
rs74056389	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74056391	1.00[ASN][1000 genomes]
rs74056393	1.00[AMR][1000 genomes]
rs74056394	1.00[ASN][1000 genomes]
rs74056396	1.00[ASN][1000 genomes]
rs74056398	1.00[AMR][1000 genomes]
rs74056399	1.00[AMR][1000 genomes]
rs74056402	1.00[AMR][1000 genomes]
rs74056451	1.00[AMR][1000 genomes]
rs74056453	1.00[AMR][1000 genomes]
rs74056462	1.00[AMR][1000 genomes]
rs74058205	1.00[AMR][1000 genomes]
rs74058206	1.00[AMR][1000 genomes]
rs74058207	1.00[AMR][1000 genomes]
rs74058208	1.00[AMR][1000 genomes]
rs74058211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65176000-65186400	Weak transcription	Osteobl	bone
2	chr14:65177000-65189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:65180800-65185400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:65181000-65189400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr14:65181000-65197600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr14:65181200-65185800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:65181200-65189600	Enhancers	Liver	Liver
8	chr14:65181200-65197000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr14:65181400-65184800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65181600-65189400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr14:65181800-65184600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:65181800-65185000	Enhancers	Fetal Muscle Trunk	muscle
13	chr14:65181800-65186200	Enhancers	Fetal Muscle Leg	muscle
14	chr14:65181800-65188800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:65181800-65190600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:65181800-65192400	Enhancers	Adipose Nuclei	Adipose
17	chr14:65181800-65194400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr14:65182000-65185200	Enhancers	Fetal Kidney	kidney
19	chr14:65182000-65185800	Enhancers	Gastric	stomach
20	chr14:65182000-65190800	Enhancers	Stomach Mucosa	stomach
21	chr14:65182200-65184800	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr14:65182200-65191600	Enhancers	Spleen	Spleen
23	chr14:65182600-65184600	Enhancers	A549	lung
24	chr14:65182600-65187200	Enhancers	Left Ventricle	heart
25	chr14:65182800-65185800	Enhancers	Fetal Heart	heart
26	chr14:65182800-65186200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:65182800-65187600	Enhancers	NH-A	brain
28	chr14:65182800-65193800	Enhancers	Esophagus	oesophagus
29	chr14:65183000-65184600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr14:65183000-65184600	Transcr. at gene 5' and 3'	NHEK	skin
31	chr14:65183000-65185400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:65183000-65186000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr14:65183000-65194600	Weak transcription	Fetal Brain Female	brain
34	chr14:65183000-65196200	Genic enhancers	Fetal Intestine Small	intestine
35	chr14:65183200-65184800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:65183200-65184800	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr14:65183200-65185000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr14:65183200-65186800	Enhancers	Placenta	Placenta
39	chr14:65183400-65184600	Enhancers	Primary hematopoietic stem cells	blood
40	chr14:65183400-65184600	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr14:65183400-65184800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr14:65183400-65184800	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr14:65183400-65185000	Enhancers	Fetal Thymus	thymus
44	chr14:65183400-65185400	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr14:65183400-65185400	Enhancers	Lung	lung
46	chr14:65183400-65185600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr14:65183400-65185600	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr14:65183400-65186600	Enhancers	Small Intestine	intestine
49	chr14:65183400-65187800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:65183400-65188400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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