Variant report

Variant	rs73271697
Chromosome Location	chr14:65166657-65166658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65145652..65150075-chr14:65165666..65170172,5	MCF-7	breast:
2	chr14:65166002..65169038-chr14:65170333..65174103,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10138311	1.00[ASN][1000 genomes]
rs17101997	0.83[AFR][1000 genomes]
rs17102000	1.00[ASN][1000 genomes]
rs17102003	1.00[ASN][1000 genomes]
rs17102005	1.00[ASN][1000 genomes]
rs17102007	1.00[ASN][1000 genomes]
rs17767128	0.98[EUR][1000 genomes]
rs41456047	1.00[ASN][1000 genomes]
rs4453374	1.00[ASN][1000 genomes]
rs59115111	1.00[ASN][1000 genomes]
rs74056388	1.00[ASN][1000 genomes]
rs74056389	1.00[ASN][1000 genomes]
rs74056391	1.00[ASN][1000 genomes]
rs74056394	1.00[ASN][1000 genomes]
rs74056396	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65160000-65168400	Weak transcription	HMEC	breast
3	chr14:65160000-65168600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:65161200-65169200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65161400-65168200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:65161800-65168400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65162000-65167600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:65162200-65169800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:65163200-65170600	Weak transcription	Right Ventricle	heart
10	chr14:65163400-65167400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:65163400-65170400	Weak transcription	Left Ventricle	heart
12	chr14:65163400-65170600	Weak transcription	Right Atrium	heart
13	chr14:65163600-65168200	Weak transcription	Brain Anterior Caudate	brain
14	chr14:65163600-65170000	Weak transcription	Fetal Heart	heart
15	chr14:65163800-65169600	Weak transcription	Colonic Mucosa	Colon
16	chr14:65164200-65168400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:65164400-65167200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:65165200-65166800	Enhancers	Fetal Thymus	thymus
19	chr14:65165400-65167200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr14:65165600-65167600	Weak transcription	Brain Substantia Nigra	brain
21	chr14:65165800-65168000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr14:65165800-65169400	Weak transcription	Adipose Nuclei	Adipose
23	chr14:65166000-65167600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:65166000-65167600	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:65166000-65167800	Weak transcription	Brain Angular Gyrus	brain
26	chr14:65166000-65167800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:65166000-65167800	Weak transcription	Fetal Kidney	kidney
28	chr14:65166000-65168800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:65166000-65169200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:65166000-65169200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:65166000-65170000	Weak transcription	Liver	Liver
32	chr14:65166000-65170200	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:65166200-65167200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr14:65166200-65167200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:65166200-65167200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:65166200-65167400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr14:65166200-65167600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr14:65166200-65167800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:65166200-65168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:65166200-65168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:65166200-65169200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:65166200-65170400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:65166400-65166800	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr14:65166400-65166800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr14:65166400-65167200	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr14:65166400-65167800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr14:65166400-65168200	Weak transcription	A549	lung
48	chr14:65166400-65168400	Weak transcription	NHEK	skin
49	chr14:65166400-65169200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:65166400-65169400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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