Variant report

Variant	rs74056391
Chromosome Location	chr14:65181118-65181119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65168529..65178400-chr14:65179583..65195815,52	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10138311	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17102000	1.00[ASN][1000 genomes]
rs17102003	1.00[ASN][1000 genomes]
rs17102005	1.00[ASN][1000 genomes]
rs17102007	1.00[ASN][1000 genomes]
rs41456047	1.00[ASN][1000 genomes]
rs4453374	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59115111	1.00[ASN][1000 genomes]
rs73271697	1.00[ASN][1000 genomes]
rs74056388	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74056389	1.00[ASN][1000 genomes]
rs74056394	1.00[ASN][1000 genomes]
rs74056396	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65175200-65181800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65176000-65186400	Weak transcription	Osteobl	bone
3	chr14:65176200-65181400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:65176200-65182000	Weak transcription	Colonic Mucosa	Colon
5	chr14:65176400-65181200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:65176400-65181400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:65176400-65181800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:65176400-65182000	Weak transcription	Stomach Mucosa	stomach
9	chr14:65176800-65181400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65176800-65181600	Weak transcription	Esophagus	oesophagus
11	chr14:65176800-65182000	Weak transcription	Gastric	stomach
12	chr14:65177000-65181400	Weak transcription	Pancreas	Pancrea
13	chr14:65177000-65181800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:65177000-65189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:65177200-65181400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:65177200-65183400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr14:65177600-65181400	Weak transcription	Aorta	Aorta
18	chr14:65177800-65181200	Weak transcription	Placenta	Placenta
19	chr14:65178000-65181400	Weak transcription	Left Ventricle	heart
20	chr14:65178000-65181400	Weak transcription	Lung	lung
21	chr14:65178000-65181400	Weak transcription	Right Atrium	heart
22	chr14:65178000-65181600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr14:65178000-65181800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:65178000-65182000	Weak transcription	Ovary	ovary
25	chr14:65178000-65182000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:65178200-65181200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr14:65178200-65181400	Weak transcription	Fetal Intestine Small	intestine
28	chr14:65178200-65181800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr14:65178200-65182000	Weak transcription	Fetal Stomach	stomach
30	chr14:65178200-65182000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr14:65178200-65182000	Weak transcription	Stomach Smooth Muscle	stomach
32	chr14:65179000-65181200	Weak transcription	Liver	Liver
33	chr14:65179000-65181600	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:65179000-65181800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:65179200-65181400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:65179400-65181400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:65179800-65181800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:65180200-65181800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr14:65180400-65181600	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr14:65180400-65181800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:65180400-65181800	Weak transcription	Fetal Heart	heart
42	chr14:65180400-65181800	Strong transcription	A549	lung
43	chr14:65180400-65182000	Weak transcription	Fetal Kidney	kidney
44	chr14:65180600-65181600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:65180600-65181800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:65180600-65181800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:65180800-65181200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr14:65180800-65181200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr14:65180800-65181400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:65180800-65181400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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