Variant report

Variant	rs74056355
Chromosome Location	chr14:65111155-65111156
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005413..65007156-chr14:65110465..65112406,2	MCF-7	breast:
2	chr14:65102703..65104469-chr14:65109001..65111503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10130553	1.00[AMR][1000 genomes]
rs10133196	1.00[AMR][1000 genomes]
rs10135368	1.00[AMR][1000 genomes]
rs12101185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17101973	1.00[AMR][1000 genomes]
rs41381946	1.00[AMR][1000 genomes]
rs41456047	1.00[AMR][1000 genomes]
rs55845128	1.00[AMR][1000 genomes]
rs58703532	1.00[AMR][1000 genomes]
rs60242081	1.00[AMR][1000 genomes]
rs73271700	1.00[AMR][1000 genomes]
rs74056006	1.00[AMR][1000 genomes]
rs74056027	1.00[AMR][1000 genomes]
rs74056031	1.00[AMR][1000 genomes]
rs74056321	1.00[AMR][1000 genomes]
rs74056335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056368	1.00[AMR][1000 genomes]
rs74056389	1.00[AMR][1000 genomes]
rs74056393	1.00[AMR][1000 genomes]
rs74056398	1.00[AMR][1000 genomes]
rs74056399	1.00[AMR][1000 genomes]
rs74056402	1.00[AMR][1000 genomes]
rs74056451	1.00[AMR][1000 genomes]
rs74056453	1.00[AMR][1000 genomes]
rs74056462	1.00[AMR][1000 genomes]
rs74058205	1.00[AMR][1000 genomes]
rs74058206	1.00[AMR][1000 genomes]
rs74058207	1.00[AMR][1000 genomes]
rs74058208	1.00[AMR][1000 genomes]
rs74058211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65099400-65111600	Weak transcription	Osteobl	bone
2	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
5	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:65106800-65111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:65106800-65111600	Weak transcription	NHLF	lung
8	chr14:65106800-65112600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:65106800-65112600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
11	chr14:65107000-65111200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:65107000-65111800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:65107000-65112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:65107000-65112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:65108000-65111800	Weak transcription	HMEC	breast
16	chr14:65108200-65112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:65108800-65111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:65110200-65111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:65110600-65111200	ZNF genes & repeats	A549	lung
20	chr14:65110600-65116200	Enhancers	Placenta	Placenta
21	chr14:65110800-65111200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65111000-65113200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:65111000-65113400	Enhancers	H1 Cell Line	embryonic stem cell

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