Variant report

Variant	rs74056335
Chromosome Location	chr14:65071932-65071933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10130553	1.00[AMR][1000 genomes]
rs10133196	1.00[AMR][1000 genomes]
rs10135368	1.00[AMR][1000 genomes]
rs12101185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17101973	1.00[AMR][1000 genomes]
rs41381946	1.00[AMR][1000 genomes]
rs41456047	1.00[AMR][1000 genomes]
rs55845128	1.00[AMR][1000 genomes]
rs58703532	1.00[AMR][1000 genomes]
rs60242081	1.00[AMR][1000 genomes]
rs73271700	1.00[AMR][1000 genomes]
rs74056006	1.00[AMR][1000 genomes]
rs74056027	1.00[AMR][1000 genomes]
rs74056321	1.00[AMR][1000 genomes]
rs74056355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056368	1.00[AMR][1000 genomes]
rs74056389	1.00[AMR][1000 genomes]
rs74056393	1.00[AMR][1000 genomes]
rs74056398	1.00[AMR][1000 genomes]
rs74056399	1.00[AMR][1000 genomes]
rs74056402	1.00[AMR][1000 genomes]
rs74056451	1.00[AMR][1000 genomes]
rs74056453	1.00[AMR][1000 genomes]
rs74056462	1.00[AMR][1000 genomes]
rs74058205	1.00[AMR][1000 genomes]
rs74058206	1.00[AMR][1000 genomes]
rs74058207	1.00[AMR][1000 genomes]
rs74058208	1.00[AMR][1000 genomes]
rs74058211	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65068600-65078200	Weak transcription	Pancreas	Pancrea
2	chr14:65068800-65072600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:65068800-65072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65068800-65072800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65068800-65079400	Weak transcription	Right Atrium	heart
6	chr14:65069800-65072000	Enhancers	NHEK	skin
7	chr14:65069800-65074000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:65070200-65072000	Weak transcription	Gastric	stomach
9	chr14:65071200-65072000	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:65071400-65072000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:65071600-65072000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:65071600-65072000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr14:65071600-65072200	Enhancers	Primary T cells from cord blood	blood
14	chr14:65071800-65073200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:65071800-65073600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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