Variant report

Variant	rs229677
Chromosome Location	chr14:65154835-65154836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65148833..65151255-chr14:65153026..65155458,2	K562	blood:
2	chr14:65150365..65152992-chr14:65154794..65157024,2	MCF-7	breast:
3	chr14:65154137..65157295-chr14:65167882..65171071,3	MCF-7	breast:
4	chr14:65154198..65155893-chr14:65160507..65162048,2	K562	blood:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10138525	1.00[JPT][hapmap]
rs1695770	1.00[CHD][hapmap];0.86[JPT][hapmap]
rs7143124	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7161278	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65147000-65155000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:65149200-65155200	Weak transcription	Colonic Mucosa	Colon
3	chr14:65149400-65155000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:65149400-65155000	Weak transcription	Fetal Intestine Large	intestine
5	chr14:65149400-65159000	Weak transcription	Right Atrium	heart
6	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:65149600-65155000	Weak transcription	Stomach Mucosa	stomach
8	chr14:65149600-65159200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:65149800-65155000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:65150000-65155000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:65150200-65155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:65150200-65159000	Weak transcription	Right Ventricle	heart
13	chr14:65150400-65155200	Weak transcription	Esophagus	oesophagus
14	chr14:65151200-65159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:65151400-65155000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:65151400-65155000	Weak transcription	HMEC	breast
17	chr14:65151400-65155200	Weak transcription	Pancreas	Pancrea
18	chr14:65152400-65159200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:65152800-65159000	Weak transcription	Brain Anterior Caudate	brain
20	chr14:65153000-65155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:65153000-65155600	Weak transcription	Fetal Thymus	thymus
22	chr14:65153000-65159000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:65153000-65160200	Weak transcription	Placenta	Placenta
24	chr14:65153200-65155000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:65153200-65155000	Weak transcription	Spleen	Spleen
26	chr14:65153200-65155200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:65153200-65155600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr14:65153200-65159000	Weak transcription	Brain Angular Gyrus	brain
29	chr14:65153800-65156800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:65154000-65156800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr14:65154200-65156000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
32	chr14:65154200-65156200	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr14:65154200-65156400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr14:65154200-65156800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr14:65154400-65156000	Enhancers	Primary hematopoietic stem cells	blood
36	chr14:65154400-65156800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:65154400-65156800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:65154400-65156800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:65154600-65155000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr14:65154600-65155000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:65154600-65156200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:65154800-65155000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr14:65154800-65156000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
44	chr14:65154800-65156200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr14:65154800-65156200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr14:65154800-65156800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr14:65154800-65157000	Enhancers	Fetal Intestine Small	intestine

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