Variant report

Variant	rs16960086
Chromosome Location	chr15:35217407-35217408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35211074..35213644-chr15:35214975..35217514,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16959971	0.85[AFR][1000 genomes]
rs16960095	1.00[AFR][1000 genomes]
rs16960123	1.00[AFR][1000 genomes]
rs16960220	0.92[AFR][1000 genomes]
rs7169614	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:35186000-35220000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:35186000-35220000	Weak transcription	Pancreas	Pancrea
4	chr15:35186000-35223200	Weak transcription	Gastric	stomach
5	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
6	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:35198000-35220600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
10	chr15:35199000-35223200	Weak transcription	Spleen	Spleen
11	chr15:35204600-35220800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:35204600-35221600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:35204600-35223600	Weak transcription	Psoas Muscle	Psoas
14	chr15:35204600-35227000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:35207000-35218400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:35207000-35219800	Weak transcription	Aorta	Aorta
17	chr15:35207000-35223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:35207000-35234600	Weak transcription	Stomach Mucosa	stomach
19	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
20	chr15:35207200-35219800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:35207400-35223600	Weak transcription	Colonic Mucosa	Colon
22	chr15:35207400-35239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:35207600-35223800	Weak transcription	Right Ventricle	heart
24	chr15:35208200-35223200	Weak transcription	Lung	lung
25	chr15:35208600-35220200	Weak transcription	Brain Germinal Matrix	brain
26	chr15:35209800-35232200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:35210000-35219800	Weak transcription	Brain Substantia Nigra	brain
28	chr15:35210400-35220200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:35210600-35217600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:35210600-35218800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:35210600-35220000	Weak transcription	Ovary	ovary
32	chr15:35210600-35220000	Weak transcription	NHEK	skin
33	chr15:35210600-35223200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:35210800-35218600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:35210800-35219600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:35210800-35219600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:35210800-35220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:35211000-35218600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:35211000-35218800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr15:35211000-35219600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr15:35211000-35219600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:35211000-35219800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:35211000-35219800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:35211000-35219800	Weak transcription	Fetal Lung	lung
45	chr15:35211000-35219800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:35211000-35220000	Weak transcription	Brain Hippocampus Middle	brain
47	chr15:35211000-35221800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:35211000-35222000	Weak transcription	NHDF-Ad	bronchial
49	chr15:35211000-35224000	Weak transcription	NHLF	lung
50	chr15:35211000-35231800	Weak transcription	Brain Angular Gyrus	brain

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