Variant report

Variant	rs16960220
Chromosome Location	chr15:35261791-35261792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:35256436..35258004-chr15:35259347..35262190,2	MCF-7	breast:
2	chr15:35261639..35264057-chr15:35280199..35283795,4	MCF-7	breast:
3	chr15:35261395..35262156-chr3:48700550..48701362,2	Hela-S3	cervix:
4	chr15:35260390..35263299-chr15:35270062..35272008,3	K562	blood:
5	chr15:35252626..35258121-chr15:35259367..35263228,9	K562	blood:
6	chr15:35255428..35258097-chr15:35259367..35262801,3	K562	blood:
7	chr15:35259687..35263562-chr15:35278927..35282925,7	K562	blood:
8	chr15:35261372..35262043-chr15:35279881..35280440,2	MCF-7	breast:
9	chr15:35261505..35262096-chr15:35280433..35281003,2	Hela-S3	cervix:
10	chr11:61594734..61595282-chr15:35261416..35262282,2	NB4	blood:
11	chr15:35261588..35262237-chr15:35280214..35280953,2	NB4	blood:
12	chr1:144533685..144534231-chr15:35261395..35262017,2	Hela-S3	cervix:
13	chr15:35261588..35262173-chr17:56736250..56737190,2	HCT-116	colon:
14	chr15:35260342..35263784-chr15:35278927..35282487,7	K562	blood:
15	chr15:35260390..35261999-chr15:35270459..35271963,2	K562	blood:
16	chr15:34330030..34332710-chr15:35259474..35262090,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000134824	Chromatin interaction
ENSG00000228350	Chromatin interaction
ENSG00000198146	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000212768	Chromatin interaction
ENSG00000169857	Chromatin interaction
ENSG00000021776	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16960086	0.92[AFR][1000 genomes]
rs16960095	0.92[AFR][1000 genomes]
rs16960123	0.92[AFR][1000 genomes]
rs7169614	0.88[AFR][1000 genomes]
rs7183161	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35260200-35262600	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:35260600-35261800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:35260600-35262400	Active TSS	HSMM	muscle
4	chr15:35260600-35262600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:35260600-35262600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr15:35260800-35261800	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr15:35260800-35262200	Active TSS	Fetal Muscle Trunk	muscle
8	chr15:35260800-35262200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr15:35260800-35262400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:35260800-35262400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:35260800-35262400	Active TSS	HSMMtube	muscle
12	chr15:35260800-35262600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr15:35260800-35262600	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr15:35260800-35262600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:35260800-35262600	Active TSS	Left Ventricle	heart
16	chr15:35260800-35262600	Active TSS	Right Ventricle	heart
17	chr15:35261000-35261800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:35261000-35261800	Bivalent/Poised TSS	HepG2	liver
19	chr15:35261000-35262400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:35261000-35262400	Active TSS	H9 Cell Line	embryonic stem cell
21	chr15:35261000-35262400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:35261000-35262400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:35261000-35262400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:35261000-35262400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:35261000-35262400	Active TSS	Aorta	Aorta
26	chr15:35261000-35262400	Active TSS	Fetal Intestine Large	intestine
27	chr15:35261000-35262400	Active TSS	GM12878-XiMat	blood
28	chr15:35261000-35262600	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr15:35261000-35262600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:35261000-35262600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:35261000-35262600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr15:35261000-35262600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:35261000-35262600	Active TSS	Fetal Intestine Small	intestine
34	chr15:35261000-35262600	Active TSS	Ovary	ovary
35	chr15:35261000-35262600	Active TSS	Psoas Muscle	Psoas
36	chr15:35261000-35262600	Active TSS	Stomach Mucosa	stomach
37	chr15:35261000-35262600	Active TSS	A549	lung
38	chr15:35261000-35262600	Active TSS	NHDF-Ad	bronchial
39	chr15:35261200-35262000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:35261200-35262000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:35261200-35262000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:35261200-35262000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:35261200-35262000	Active TSS	Gastric	stomach
44	chr15:35261200-35262000	Active TSS	Small Intestine	intestine
45	chr15:35261200-35262200	Active TSS	Fetal Brain Female	brain
46	chr15:35261200-35262400	Active TSS	H1 Cell Line	embryonic stem cell
47	chr15:35261200-35262400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:35261200-35262400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:35261200-35262400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:35261200-35262400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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