Variant report

Variant	rs7169614
Chromosome Location	chr15:35269437-35269438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:35268842-35269705	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:35267803-35270462	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr15:35269147-35269897	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr15:35268400-35275547	K562	blood:	n/a	n/a
5	POLR2A	chr15:35268840-35269442	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:35268498-35269807	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:35268446..35269973-chr15:35278837..35281410,2	MCF-7	breast:
2	chr15:35268497..35270251-chr15:35290176..35292760,2	MCF-7	breast:
3	chr15:35267358..35269882-chr15:35273203..35276166,3	K562	blood:
4	chr15:35266160..35271969-chr15:35278502..35282901,8	K562	blood:

Variant related genes	Relation type
ENSG00000212768	TF binding region
ENSG00000198146	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16959971	0.81[AFR][1000 genomes]
rs16960086	0.88[AFR][1000 genomes]
rs16960095	0.88[AFR][1000 genomes]
rs16960123	0.88[AFR][1000 genomes]
rs16960220	0.88[AFR][1000 genomes]
rs7183161	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35262000-35276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:35262000-35278600	Weak transcription	Gastric	stomach
3	chr15:35262400-35269600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:35262400-35269600	Weak transcription	HSMM	muscle
5	chr15:35262400-35269800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:35262400-35270000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:35262400-35273200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:35262400-35273400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:35262400-35273400	Weak transcription	GM12878-XiMat	blood
10	chr15:35262400-35273600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:35262400-35273600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:35262400-35273600	Weak transcription	Fetal Intestine Large	intestine
13	chr15:35262400-35273600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:35262400-35274600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:35262400-35274600	Weak transcription	NHLF	lung
16	chr15:35262400-35278600	Weak transcription	HSMMtube	muscle
17	chr15:35262400-35279000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:35262400-35279000	Weak transcription	Aorta	Aorta
19	chr15:35262600-35269600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:35262600-35269800	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:35262600-35269800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:35262600-35269800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr15:35262600-35270000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:35262600-35270200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:35262600-35271000	Weak transcription	Fetal Thymus	thymus
26	chr15:35262600-35271200	Weak transcription	A549	lung
27	chr15:35262600-35272800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:35262600-35273200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:35262600-35273200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:35262600-35273200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:35262600-35273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:35262600-35273400	Weak transcription	Primary T cells from cord blood	blood
33	chr15:35262600-35273400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr15:35262600-35273400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:35262600-35273600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr15:35262600-35273600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:35262600-35273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr15:35262600-35273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:35262600-35273600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:35262600-35273600	Weak transcription	Liver	Liver
41	chr15:35262600-35273600	Weak transcription	Brain Germinal Matrix	brain
42	chr15:35262600-35273600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:35262600-35273600	Weak transcription	Hela-S3	cervix
44	chr15:35262600-35273600	Weak transcription	HMEC	breast
45	chr15:35262600-35273600	Weak transcription	NHEK	skin
46	chr15:35262600-35273800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr15:35262600-35273800	Weak transcription	Fetal Lung	lung
48	chr15:35262600-35273800	Weak transcription	NHDF-Ad	bronchial
49	chr15:35262600-35274200	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr15:35262600-35274400	Weak transcription	Fetal Muscle Leg	muscle

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