Variant report

Variant	rs16960673
Chromosome Location	chr17:63149361-63149362
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12453132	0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453147	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12600387	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs12600391	0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs12603232	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16960810	0.96[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs1877822	0.96[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2014681	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58338644	0.88[ASN][1000 genomes]
rs59622366	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60480413	0.90[ASN][1000 genomes]
rs60814564	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72850394	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8069964	0.96[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs884973	0.90[ASN][1000 genomes]
rs9303480	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9897302	0.87[ASN][1000 genomes]
rs9900252	0.96[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63138600-63151200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr17:63143600-63152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr17:63144400-63150800	Weak transcription	Brain Anterior Caudate	brain
7	chr17:63145800-63155400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
9	chr17:63147000-63150600	Weak transcription	GM12878-XiMat	blood
10	chr17:63147200-63150800	Weak transcription	Thymus	Thymus
11	chr17:63148400-63150400	Weak transcription	Fetal Thymus	thymus
12	chr17:63148400-63151000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr17:63148400-63160000	Weak transcription	Lung	lung
14	chr17:63148800-63151000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr17:63149000-63150000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:63149200-63149400	Bivalent Enhancer	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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