Variant report

Variant	rs60814564
Chromosome Location	chr17:63160795-63160796
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63151108..63154306-chr17:63159891..63162115,3	MCF-7	breast:
2	chr17:63160128..63162121-chr17:63168023..63170188,2	K562	blood:
3	chr17:63146853..63148848-chr17:63160365..63162222,2	K562	blood:
4	chr17:63159589..63162697-chr17:63164587..63167490,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12453132	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12453147	0.90[ASN][1000 genomes]
rs12600387	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12600391	0.99[ASN][1000 genomes]
rs12603232	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16960673	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16960810	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877822	0.97[ASN][1000 genomes]
rs2014681	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58338644	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59622366	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60480413	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850394	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8069964	0.98[ASN][1000 genomes]
rs884973	0.99[ASN][1000 genomes]
rs9303480	0.93[ASN][1000 genomes]
rs9897302	0.97[ASN][1000 genomes]
rs9900252	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
5	chr17:63150200-63162800	Weak transcription	Fetal Stomach	stomach
6	chr17:63153600-63175400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr17:63156000-63164400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr17:63156600-63165600	Weak transcription	Dnd41	blood
9	chr17:63157000-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:63157200-63169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:63159600-63160800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:63159600-63161200	Enhancers	GM12878-XiMat	blood
13	chr17:63159600-63161600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:63159600-63162000	Enhancers	K562	blood
15	chr17:63159800-63160800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr17:63159800-63160800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr17:63159800-63160800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr17:63159800-63160800	Enhancers	Fetal Thymus	thymus
19	chr17:63159800-63161000	Enhancers	Primary hematopoietic stem cells	blood
20	chr17:63159800-63161400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr17:63159800-63162800	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr17:63160000-63160800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:63160000-63160800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr17:63160000-63160800	Enhancers	Primary B cells from peripheral blood	blood
25	chr17:63160000-63160800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:63160000-63160800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:63160000-63160800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr17:63160000-63160800	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr17:63160000-63160800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr17:63160000-63160800	Enhancers	Placenta	Placenta
31	chr17:63160000-63160800	Enhancers	HUVEC	blood vessel
32	chr17:63160000-63180400	Weak transcription	Brain Substantia Nigra	brain
33	chr17:63160200-63160800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr17:63160200-63161000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr17:63160200-63161400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:63160400-63160800	Enhancers	Hela-S3	cervix
37	chr17:63160400-63164600	Weak transcription	Brain Anterior Caudate	brain
38	chr17:63160400-63166800	Weak transcription	Lung	lung
39	chr17:63160400-63167200	Weak transcription	Thymus	Thymus
40	chr17:63160400-63168800	Weak transcription	A549	lung
41	chr17:63160600-63169200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr17:63160600-63169600	Weak transcription	Spleen	Spleen

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