Variant report

Variant	rs9303480
Chromosome Location	chr17:63151551-63151552
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63150789..63152778-chr17:63153829..63156170,2	MCF-7	breast:
2	chr17:63151108..63154306-chr17:63159891..63162115,3	MCF-7	breast:
3	chr17:63134560..63136303-chr17:63148966..63151804,2	MCF-7	breast:
4	chr17:62969941..62971541-chr17:63151298..63153116,2	MCF-7	breast:
5	chr17:63137155..63140141-chr17:63151319..63152963,2	MCF-7	breast:
6	chr17:63146847..63149302-chr17:63150020..63152812,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12453132	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12453147	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12600387	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs12600391	0.93[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs12603232	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs16960673	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16960810	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs1877822	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs2014681	0.99[ASN][1000 genomes]
rs58338644	0.91[ASN][1000 genomes]
rs59622366	0.92[ASN][1000 genomes]
rs60480413	0.93[ASN][1000 genomes]
rs60814564	0.93[ASN][1000 genomes]
rs72850394	0.97[ASN][1000 genomes]
rs8069964	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs884973	0.94[ASN][1000 genomes]
rs9897302	0.90[ASN][1000 genomes]
rs9900252	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63134400-63169000	Weak transcription	Colon Smooth Muscle	Colon
2	chr17:63141000-63175200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr17:63143600-63152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:63143600-63169400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:63145800-63155400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr17:63145800-63167000	Weak transcription	Aorta	Aorta
7	chr17:63148400-63160000	Weak transcription	Lung	lung
8	chr17:63150200-63162800	Weak transcription	Fetal Stomach	stomach
9	chr17:63150400-63151600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr17:63150400-63152000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr17:63150400-63152000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:63150400-63156800	Enhancers	Fetal Thymus	thymus
13	chr17:63150600-63151600	Enhancers	GM12878-XiMat	blood
14	chr17:63150600-63151800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:63150600-63152000	Enhancers	Placenta	Placenta
16	chr17:63150600-63152600	Enhancers	Dnd41	blood
17	chr17:63150600-63152800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:63150600-63153000	Enhancers	Primary hematopoietic stem cells	blood
19	chr17:63150800-63151600	Enhancers	Brain Anterior Caudate	brain
20	chr17:63150800-63151800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr17:63150800-63152000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr17:63150800-63152000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr17:63150800-63152000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr17:63150800-63152000	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr17:63150800-63152000	Enhancers	Thymus	Thymus
26	chr17:63150800-63152000	Enhancers	A549	lung
27	chr17:63150800-63152000	Enhancers	HUVEC	blood vessel
28	chr17:63150800-63152400	Enhancers	Primary B cells from peripheral blood	blood
29	chr17:63150800-63152600	Enhancers	Primary B cells from cord blood	blood
30	chr17:63150800-63152600	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr17:63151000-63151600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr17:63151000-63151800	Enhancers	Spleen	Spleen
33	chr17:63151000-63152200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr17:63151000-63152400	Enhancers	Fetal Intestine Large	intestine
35	chr17:63151000-63154400	Weak transcription	Fetal Kidney	kidney
36	chr17:63151000-63156800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr17:63151200-63151600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr17:63151200-63151800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr17:63151200-63151800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr17:63151200-63151800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:63151200-63151800	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr17:63151200-63152000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr17:63151200-63152000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr17:63151200-63152000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr17:63151200-63152000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:63151200-63152000	Enhancers	Colonic Mucosa	Colon
47	chr17:63151200-63152000	Enhancers	Duodenum Mucosa	Duodenum
48	chr17:63151200-63152000	Enhancers	Pancreas	Pancrea
49	chr17:63151200-63152000	Enhancers	NHEK	skin
50	chr17:63151200-63152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links