Variant report

Variant	rs16965456
Chromosome Location	chr17:38107095-38107096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38101089..38105078-chr17:38105781..38110100,7	K562	blood:
2	chr17:38102879..38104734-chr17:38106799..38109127,2	MCF-7	breast:
3	chr17:38107027..38109287-chr17:38138129..38139921,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10852937	0.86[CHB][hapmap]
rs16965455	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56946324	0.97[ASN][1000 genomes]
rs7219492	0.92[ASN][1000 genomes]
rs73985231	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73985233	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73985234	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38096400-38108400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr17:38100800-38107200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:38100800-38108400	Weak transcription	Esophagus	oesophagus
4	chr17:38103200-38108400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:38103600-38108200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:38103600-38108600	Weak transcription	HMEC	breast
7	chr17:38104400-38108400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:38105000-38107400	Weak transcription	Lung	lung
9	chr17:38105200-38108400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:38105200-38108400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr17:38105200-38108400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr17:38105200-38108600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr17:38105400-38107200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr17:38105400-38108200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:38105400-38108200	Weak transcription	Stomach Mucosa	stomach
16	chr17:38105400-38108400	Weak transcription	Primary T cells from cord blood	blood
17	chr17:38105400-38108400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:38105400-38108400	Weak transcription	Fetal Lung	lung
19	chr17:38105400-38108600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:38105400-38108600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:38105400-38108600	Weak transcription	Thymus	Thymus
22	chr17:38105400-38108600	Weak transcription	A549	lung
23	chr17:38105600-38108200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr17:38105600-38108400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr17:38105600-38108400	Weak transcription	Fetal Intestine Large	intestine
26	chr17:38105600-38108400	Weak transcription	Fetal Intestine Small	intestine
27	chr17:38105800-38108200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr17:38105800-38108600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr17:38106200-38107600	Enhancers	Fetal Thymus	thymus
30	chr17:38106200-38108600	Enhancers	Liver	Liver
31	chr17:38106400-38108600	Enhancers	Fetal Muscle Leg	muscle
32	chr17:38106600-38107200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr17:38106600-38107600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr17:38106600-38108200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:38106600-38108600	Enhancers	Fetal Muscle Trunk	muscle
36	chr17:38106800-38107200	Enhancers	Primary hematopoietic stem cells	blood
37	chr17:38106800-38107400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr17:38106800-38107400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:38106800-38107400	Weak transcription	Placenta	Placenta
40	chr17:38106800-38107800	Enhancers	Pancreas	Pancrea
41	chr17:38107000-38107200	Enhancers	K562	blood
42	chr17:38107000-38107600	Flanking Active TSS	HepG2	liver
43	chr17:38107000-38107600	Enhancers	HSMM	muscle
44	chr17:38107000-38107800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr17:38107000-38108000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr17:38107000-38108400	Weak transcription	Left Ventricle	heart
47	chr17:38107000-38108400	Weak transcription	Right Atrium	heart
48	chr17:38107000-38108400	Weak transcription	Right Ventricle	heart
49	chr17:38107000-38108400	Weak transcription	Spleen	Spleen
50	chr17:38107000-38108600	Enhancers	Primary B cells from cord blood	blood

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