Variant report

Variant	rs73985233
Chromosome Location	chr17:38105151-38105152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16965455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16965456	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56946324	0.97[ASN][1000 genomes]
rs7219492	0.92[ASN][1000 genomes]
rs73985231	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73985234	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38096400-38108400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr17:38100000-38105800	Enhancers	Fetal Thymus	thymus
3	chr17:38100800-38106800	Weak transcription	Spleen	Spleen
4	chr17:38100800-38107200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr17:38100800-38108400	Weak transcription	Esophagus	oesophagus
6	chr17:38101000-38106200	Weak transcription	Liver	Liver
7	chr17:38103200-38105600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr17:38103200-38108400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:38103400-38106600	Weak transcription	Placenta	Placenta
10	chr17:38103600-38108200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr17:38103600-38108600	Weak transcription	HMEC	breast
12	chr17:38103800-38105400	Enhancers	Thymus	Thymus
13	chr17:38103800-38105600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr17:38103800-38105800	Enhancers	Primary B cells from cord blood	blood
15	chr17:38104000-38105200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr17:38104000-38105200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr17:38104000-38105200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr17:38104000-38105400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr17:38104000-38105800	Enhancers	Primary B cells from peripheral blood	blood
20	chr17:38104000-38106400	Weak transcription	Fetal Muscle Leg	muscle
21	chr17:38104200-38105400	Enhancers	Primary T cells from cord blood	blood
22	chr17:38104200-38105600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr17:38104400-38105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr17:38104400-38108400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr17:38104800-38105400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr17:38104800-38105400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr17:38104800-38105400	Enhancers	Stomach Mucosa	stomach
28	chr17:38105000-38105200	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr17:38105000-38105400	Enhancers	Fetal Lung	lung
30	chr17:38105000-38105400	Enhancers	A549	lung
31	chr17:38105000-38105600	Flanking Active TSS	HepG2	liver
32	chr17:38105000-38107000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr17:38105000-38107400	Weak transcription	Lung	lung

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