Variant report

Variant	rs16965890
Chromosome Location	chr17:38683135-38683136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38682450..38685417-chr17:38714288..38716335,2	K562	blood:
2	chr17:38474075..38478371-chr17:38679567..38683859,4	MCF-7	breast:
3	chr17:38673323..38675272-chr17:38683066..38684839,2	K562	blood:
4	chr17:38598606..38600988-chr17:38682278..38684408,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IGFBP4-1	chr17:38682696-38683253	XLOC_012197
2	lnc-IGFBP4-1	chr17:38682696-38683254	ENSG00000266088.1
3	lnc-IGFBP4-1	chr17:38682696-38683254	NONHSAT053554

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3866675	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8065657	0.87[AMR][1000 genomes]
rs9905376	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910719	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38675600-38686600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:38677600-38687800	Weak transcription	Right Ventricle	heart
3	chr17:38678000-38686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38678200-38684200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:38678200-38685200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:38678600-38684200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr17:38678800-38686800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr17:38679200-38684200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:38679200-38686600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:38679200-38686800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:38679600-38683400	ZNF genes & repeats	A549	lung
12	chr17:38680000-38685600	Weak transcription	Hela-S3	cervix
13	chr17:38680800-38686400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr17:38681000-38686800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:38681200-38686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr17:38681200-38688600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr17:38682000-38684400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:38682000-38684600	Weak transcription	Primary T cells from cord blood	blood
19	chr17:38682000-38686800	Weak transcription	Primary B cells from cord blood	blood
20	chr17:38682400-38683200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr17:38682400-38683200	Enhancers	Left Ventricle	heart
22	chr17:38682400-38683200	Enhancers	NHEK	skin
23	chr17:38682400-38683400	Enhancers	Fetal Stomach	stomach
24	chr17:38682400-38683800	Enhancers	Placenta	Placenta
25	chr17:38682400-38684400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr17:38682600-38683200	Weak transcription	Dnd41	blood
27	chr17:38682600-38683400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr17:38682600-38686800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr17:38682600-38689000	Weak transcription	HepG2	liver
30	chr17:38682800-38683200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:38682800-38683200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr17:38682800-38683200	Enhancers	NHDF-Ad	bronchial
33	chr17:38682800-38683400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr17:38682800-38686800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr17:38683000-38683200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr17:38683000-38683200	Enhancers	Esophagus	oesophagus
37	chr17:38683000-38683200	Enhancers	Spleen	Spleen
38	chr17:38683000-38683400	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr17:38683000-38686600	Weak transcription	HMEC	breast

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