Variant report

Variant	rs9905376
Chromosome Location	chr17:38679583-38679584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr17:38678832-38679723	A549	lung:	n/a	n/a
2	TCF12	chr17:38676988-38680080	A549	lung:	n/a	chr17:38677183-38677190

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38678096..38679987-chr17:38715270..38716866,2	MCF-7	breast:
2	chr17:38600130..38602545-chr17:38675909..38679796,4	MCF-7	breast:
3	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
4	chr17:38677625..38680142-chr17:38696757..38698899,2	MCF-7	breast:
5	chr17:38474075..38478371-chr17:38679567..38683859,4	MCF-7	breast:
6	chr17:38571667..38573665-chr17:38677679..38680655,2	K562	blood:
7	chr17:38629814..38633387-chr17:38676751..38679736,4	MCF-7	breast:
8	chr17:38675352..38677497-chr17:38677864..38681564,3	MCF-7	breast:
9	chr17:38679491..38681189-chr17:38685861..38688027,2	MCF-7	breast:
10	chr17:38677974..38679924-chr17:38691519..38693332,2	MCF-7	breast:
11	chr17:38673127..38676333-chr17:38678075..38682047,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IGFBP4-1	chr17:38679552-38679907	XLOC_012197

No data

Variant related genes	Relation type
ENSG00000266088	TF binding region
ENSG00000266088	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16965890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3866675	0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8065657	0.87[AMR][1000 genomes]
rs9910719	0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058185	chr17:38629339-38689908	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3369555	chr17:38677926-38681324	Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38668400-38680600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:38671400-38679800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr17:38672600-38680800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr17:38674200-38681200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr17:38675400-38680800	Enhancers	HMEC	breast
6	chr17:38675600-38686600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr17:38677000-38679600	Enhancers	Dnd41	blood
8	chr17:38677000-38680800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:38677200-38679800	Enhancers	Esophagus	oesophagus
10	chr17:38677400-38679800	Weak transcription	Primary B cells from cord blood	blood
11	chr17:38677600-38682200	Weak transcription	Spleen	Spleen
12	chr17:38677600-38687800	Weak transcription	Right Ventricle	heart
13	chr17:38677800-38680600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:38678000-38683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:38678000-38686800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr17:38678200-38679600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr17:38678200-38679600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:38678200-38684200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:38678200-38685200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:38678400-38679600	Enhancers	A549	lung
21	chr17:38678400-38680000	Enhancers	Hela-S3	cervix
22	chr17:38678400-38680400	Weak transcription	NHDF-Ad	bronchial
23	chr17:38678600-38681800	Weak transcription	HSMM	muscle
24	chr17:38678600-38684200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr17:38678800-38679600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:38678800-38680200	Genic enhancers	NHEK	skin
27	chr17:38678800-38686800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr17:38679000-38682800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:38679200-38680400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr17:38679200-38680400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:38679200-38680600	Weak transcription	Primary T cells from cord blood	blood
32	chr17:38679200-38680800	Weak transcription	HSMMtube	muscle
33	chr17:38679200-38684200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr17:38679200-38686600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr17:38679200-38686800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:38679400-38679600	Enhancers	Stomach Mucosa	stomach
37	chr17:38679400-38679800	Flanking Active TSS	Placenta	Placenta
38	chr17:38679400-38680800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr17:38679400-38681400	Enhancers	HepG2	liver
40	chr17:38679400-38681600	Weak transcription	Primary T cells fromperipheralblood	blood

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