Variant report

Variant	rs8065657
Chromosome Location	chr17:38691542-38691543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38686790..38691109-chr17:38691407..38694438,4	K562	blood:
2	chr17:38655284..38659044-chr17:38686692..38691600,6	MCF-7	breast:
3	chr17:38690730..38692899-chr17:38709121..38712377,3	K562	blood:
4	chr17:38690637..38692842-chr17:38695894..38697593,2	K562	blood:
5	chr17:38567583..38575027-chr17:38687434..38693796,7	K562	blood:
6	chr17:38595245..38602220-chr17:38686762..38692136,14	MCF-7	breast:
7	chr17:38690637..38694364-chr17:38695614..38697593,5	K562	blood:
8	chr17:38677974..38679924-chr17:38691519..38693332,2	MCF-7	breast:
9	chr17:38615426..38618640-chr17:38688722..38692627,3	MCF-7	breast:
10	chr17:38518295..38520189-chr17:38690937..38693707,2	MCF-7	breast:
11	chr17:38690144..38691765-chr17:38711279..38713760,2	MCF-7	breast:
12	chr17:38597490..38601746-chr17:38686793..38692185,8	MCF-7	breast:
13	chr17:38514587..38516570-chr17:38688574..38692395,3	K562	blood:
14	chr17:38690634..38691562-chr17:38716185..38716887,2	MCF-7	breast:
15	chr17:38519019..38522951-chr17:38688553..38692204,5	K562	blood:
16	chr17:38669978..38672027-chr17:38691106..38694044,2	K562	blood:
17	chr17:38690730..38694650-chr17:38709121..38712377,6	K562	blood:
18	chr17:38689494..38692182-chr17:38712855..38714426,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000240125	Chromatin interaction
ENSG00000131747	Chromatin interaction
ENSG00000131746	Chromatin interaction
ENSG00000183153	Chromatin interaction

rs_ID	r²[population]
rs1072070	0.87[EUR][1000 genomes]
rs11871009	1.00[EUR][1000 genomes]
rs16965857	1.00[EUR][1000 genomes]
rs16965864	1.00[EUR][1000 genomes]
rs16965890	0.87[AMR][1000 genomes]
rs28485796	1.00[EUR][1000 genomes]
rs3866675	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56151683	1.00[EUR][1000 genomes]
rs7208120	1.00[EUR][1000 genomes]
rs7222478	1.00[EUR][1000 genomes]
rs8064741	1.00[EUR][1000 genomes]
rs8064890	1.00[EUR][1000 genomes]
rs9894865	1.00[EUR][1000 genomes]
rs9899509	1.00[EUR][1000 genomes]
rs9905376	0.87[AMR][1000 genomes]
rs9909468	1.00[EUR][1000 genomes]
rs9910719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9915820	1.00[EUR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38684200-38697000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:38686400-38698200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr17:38686600-38692600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:38686600-38697200	Enhancers	Fetal Thymus	thymus
5	chr17:38687000-38692800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:38687000-38696600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:38688000-38692600	Weak transcription	Small Intestine	intestine
9	chr17:38688200-38692200	Weak transcription	Esophagus	oesophagus
10	chr17:38688200-38692200	Weak transcription	Right Ventricle	heart
11	chr17:38688200-38692600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:38688800-38699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:38688800-38700200	Enhancers	Fetal Heart	heart
14	chr17:38689800-38692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr17:38689800-38696200	Weak transcription	Fetal Intestine Large	intestine
16	chr17:38690000-38692200	Weak transcription	Fetal Kidney	kidney
17	chr17:38690000-38692200	Weak transcription	Fetal Lung	lung
18	chr17:38690000-38692400	Weak transcription	Stomach Mucosa	stomach
19	chr17:38690000-38692400	Enhancers	K562	blood
20	chr17:38690000-38692600	Weak transcription	Colonic Mucosa	Colon
21	chr17:38690000-38692600	Weak transcription	Ovary	ovary
22	chr17:38690000-38698400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr17:38690200-38692000	Weak transcription	Colon Smooth Muscle	Colon
24	chr17:38690200-38692200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr17:38690200-38692400	Weak transcription	Brain Anterior Caudate	brain
26	chr17:38690200-38692600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr17:38690200-38692800	Weak transcription	Fetal Intestine Small	intestine
28	chr17:38690200-38694600	Weak transcription	Brain Angular Gyrus	brain
29	chr17:38690400-38692200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr17:38690400-38692600	Weak transcription	Brain Hippocampus Middle	brain
31	chr17:38690400-38692800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr17:38690400-38692800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr17:38690400-38692800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr17:38690400-38692800	Weak transcription	HSMM	muscle
35	chr17:38690400-38695600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:38690600-38692000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr17:38690600-38692200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr17:38690600-38692200	Weak transcription	Pancreas	Pancrea
39	chr17:38690600-38692200	Weak transcription	HSMMtube	muscle
40	chr17:38690600-38692200	Weak transcription	HUVEC	blood vessel
41	chr17:38690600-38692400	Weak transcription	HMEC	breast
42	chr17:38690600-38692400	Weak transcription	NHEK	skin
43	chr17:38690600-38692600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:38690600-38692800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr17:38690800-38692000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:38690800-38692000	Weak transcription	Fetal Stomach	stomach
47	chr17:38690800-38692200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr17:38690800-38692400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr17:38690800-38692400	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr17:38690800-38692400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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