Variant report

Variant	rs9909468
Chromosome Location	chr17:38698189-38698190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38697538..38699507-chr17:39684306..39686234,2	MCF-7	breast:
2	chr17:38564656..38566878-chr17:38698159..38699997,2	MCF-7	breast:
3	chr17:38473709..38475691-chr17:38696653..38699431,2	MCF-7	breast:
4	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
5	chr17:38691743..38694026-chr17:38697146..38698764,2	MCF-7	breast:
6	chr17:38691549..38694509-chr17:38697866..38699673,4	K562	blood:
7	chr17:38603612..38606110-chr17:38697155..38700446,4	MCF-7	breast:
8	chr17:38692611..38695804-chr17:38697693..38700776,3	K562	blood:
9	chr17:38465291..38467174-chr17:38696957..38698875,2	MCF-7	breast:
10	chr17:38476612..38479886-chr17:38696513..38699712,3	MCF-7	breast:
11	chr17:38596291..38600592-chr17:38695103..38698831,4	MCF-7	breast:
12	chr17:38696903..38699108-chr17:38700807..38704169,3	MCF-7	breast:
13	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:
14	chr17:38677625..38680142-chr17:38696757..38698899,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000171345	Chromatin interaction

rs_ID	r²[population]
rs1072070	0.87[EUR][1000 genomes]
rs11871009	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965857	1.00[EUR][1000 genomes]
rs16965864	1.00[EUR][1000 genomes]
rs28485796	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3866675	1.00[EUR][1000 genomes]
rs56151683	1.00[EUR][1000 genomes]
rs7208120	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7208316	0.94[AMR][1000 genomes]
rs7222478	1.00[EUR][1000 genomes]
rs8064741	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8064890	1.00[EUR][1000 genomes]
rs8065657	1.00[EUR][1000 genomes]
rs9675320	0.89[ASN][1000 genomes]
rs9894865	1.00[EUR][1000 genomes]
rs9899509	1.00[EUR][1000 genomes]
rs9902343	1.00[ASN][1000 genomes]
rs9910719	1.00[EUR][1000 genomes]
rs9915820	1.00[EUR][1000 genomes]

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38686400-38698200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:38688800-38699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:38688800-38700200	Enhancers	Fetal Heart	heart
5	chr17:38690000-38698400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:38691200-38698800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr17:38691800-38700200	Enhancers	Dnd41	blood
8	chr17:38692000-38698200	Enhancers	Adipose Nuclei	Adipose
9	chr17:38692000-38700200	Enhancers	Left Ventricle	heart
10	chr17:38692000-38700200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr17:38692000-38700600	Enhancers	Fetal Stomach	stomach
12	chr17:38692200-38698400	Enhancers	A549	lung
13	chr17:38692200-38700600	Enhancers	Placenta	Placenta
14	chr17:38692200-38700600	Enhancers	HepG2	liver
15	chr17:38692400-38700000	Enhancers	Lung	lung
16	chr17:38692400-38700200	Enhancers	HMEC	breast
17	chr17:38692600-38701000	Enhancers	Fetal Muscle Leg	muscle
18	chr17:38692800-38700000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr17:38692800-38700800	Enhancers	Liver	Liver
20	chr17:38693000-38698200	Weak transcription	Fetal Brain Female	brain
21	chr17:38693200-38698200	Enhancers	K562	blood
22	chr17:38693200-38700600	Enhancers	Fetal Muscle Trunk	muscle
23	chr17:38693400-38698200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:38693400-38698200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr17:38693400-38698200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:38693400-38698400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr17:38693400-38701800	Weak transcription	Gastric	stomach
28	chr17:38694200-38700000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:38694200-38700000	Enhancers	Esophagus	oesophagus
30	chr17:38694200-38700200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:38694200-38700200	Enhancers	Right Ventricle	heart
32	chr17:38694400-38700200	Enhancers	Spleen	Spleen
33	chr17:38694600-38699600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:38694600-38700200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr17:38694600-38700200	Enhancers	Right Atrium	heart
36	chr17:38694600-38700200	Enhancers	NHEK	skin
37	chr17:38694800-38698800	Weak transcription	Brain Substantia Nigra	brain
38	chr17:38694800-38700000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr17:38694800-38700200	Enhancers	Primary B cells from peripheral blood	blood
40	chr17:38695000-38698200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr17:38695000-38699400	Weak transcription	Ovary	ovary
42	chr17:38695200-38698400	Weak transcription	NH-A	brain
43	chr17:38695200-38700200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr17:38695400-38698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr17:38695400-38698400	Weak transcription	HSMMtube	muscle
46	chr17:38695600-38698200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr17:38695600-38698200	Weak transcription	HSMM	muscle
48	chr17:38695800-38699000	Weak transcription	HUVEC	blood vessel
49	chr17:38696000-38698600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
50	chr17:38696200-38698200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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