Variant report

Variant	rs9675320
Chromosome Location	chr17:38698666-38698667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38697538..38699507-chr17:39684306..39686234,2	MCF-7	breast:
2	chr17:38564656..38566878-chr17:38698159..38699997,2	MCF-7	breast:
3	chr17:38473709..38475691-chr17:38696653..38699431,2	MCF-7	breast:
4	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
5	chr17:38691743..38694026-chr17:38697146..38698764,2	MCF-7	breast:
6	chr17:38691549..38694509-chr17:38697866..38699673,4	K562	blood:
7	chr17:38603612..38606110-chr17:38697155..38700446,4	MCF-7	breast:
8	chr17:38692611..38695804-chr17:38697693..38700776,3	K562	blood:
9	chr17:38465291..38467174-chr17:38696957..38698875,2	MCF-7	breast:
10	chr17:38476612..38479886-chr17:38696513..38699712,3	MCF-7	breast:
11	chr17:38596291..38600592-chr17:38695103..38698831,4	MCF-7	breast:
12	chr17:38696903..38699108-chr17:38700807..38704169,3	MCF-7	breast:
13	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:
14	chr17:38677625..38680142-chr17:38696757..38698899,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000171345	Chromatin interaction
ENSG00000131759	Chromatin interaction

rs_ID	r²[population]
rs1018953	1.00[JPT][hapmap]
rs11574663	1.00[JPT][hapmap]
rs11871009	1.00[CHB][hapmap]
rs2229095	1.00[JPT][hapmap]
rs3136687	1.00[JPT][hapmap]
rs3136689	1.00[JPT][hapmap]
rs3136694	1.00[JPT][hapmap]
rs3136695	1.00[JPT][hapmap]
rs475298	1.00[JPT][hapmap]
rs4890086	1.00[JPT][hapmap]
rs6503543	1.00[JPT][hapmap]
rs7208120	1.00[CHB][hapmap]
rs7208316	1.00[CHB][hapmap]
rs7212543	1.00[CHB][hapmap]
rs7219622	1.00[CHB][hapmap]
rs7221799	1.00[JPT][hapmap]
rs8064741	1.00[CHB][hapmap]
rs8067673	0.89[CEU][hapmap]
rs8069091	1.00[CHB][hapmap]
rs8077724	1.00[CHB][hapmap]
rs896136	1.00[JPT][hapmap]
rs921394	1.00[JPT][hapmap]
rs9901908	1.00[JPT][hapmap]
rs9902343	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9909468	0.89[ASN][1000 genomes]
rs9912358	1.00[JPT][hapmap]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38687400-38698800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:38688800-38699000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:38688800-38700200	Enhancers	Fetal Heart	heart
4	chr17:38691200-38698800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:38691800-38700200	Enhancers	Dnd41	blood
6	chr17:38692000-38700200	Enhancers	Left Ventricle	heart
7	chr17:38692000-38700200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr17:38692000-38700600	Enhancers	Fetal Stomach	stomach
9	chr17:38692200-38700600	Enhancers	Placenta	Placenta
10	chr17:38692200-38700600	Enhancers	HepG2	liver
11	chr17:38692400-38700000	Enhancers	Lung	lung
12	chr17:38692400-38700200	Enhancers	HMEC	breast
13	chr17:38692600-38701000	Enhancers	Fetal Muscle Leg	muscle
14	chr17:38692800-38700000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr17:38692800-38700800	Enhancers	Liver	Liver
16	chr17:38693200-38700600	Enhancers	Fetal Muscle Trunk	muscle
17	chr17:38693400-38701800	Weak transcription	Gastric	stomach
18	chr17:38694200-38700000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:38694200-38700000	Enhancers	Esophagus	oesophagus
20	chr17:38694200-38700200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:38694200-38700200	Enhancers	Right Ventricle	heart
22	chr17:38694400-38700200	Enhancers	Spleen	Spleen
23	chr17:38694600-38699600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:38694600-38700200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:38694600-38700200	Enhancers	Right Atrium	heart
26	chr17:38694600-38700200	Enhancers	NHEK	skin
27	chr17:38694800-38698800	Weak transcription	Brain Substantia Nigra	brain
28	chr17:38694800-38700000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:38694800-38700200	Enhancers	Primary B cells from peripheral blood	blood
30	chr17:38695000-38699400	Weak transcription	Ovary	ovary
31	chr17:38695200-38700200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr17:38695800-38699000	Weak transcription	HUVEC	blood vessel
33	chr17:38696200-38699800	Enhancers	Fetal Intestine Large	intestine
34	chr17:38696400-38699200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr17:38696600-38700200	Enhancers	Primary B cells from cord blood	blood
36	chr17:38696800-38699200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
37	chr17:38696800-38700000	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr17:38696800-38700000	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr17:38697000-38699000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:38697000-38699600	Enhancers	Primary hematopoietic stem cells	blood
41	chr17:38697000-38700000	Enhancers	Fetal Intestine Small	intestine
42	chr17:38697000-38700000	Enhancers	Placenta Amnion	Placenta Amnion
43	chr17:38697000-38700200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr17:38697200-38698800	Enhancers	Stomach Mucosa	stomach
45	chr17:38697200-38699800	Enhancers	Brain Anterior Caudate	brain
46	chr17:38697200-38700200	Enhancers	Fetal Lung	lung
47	chr17:38697200-38700200	Enhancers	Rectal Smooth Muscle	rectum
48	chr17:38697400-38699400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr17:38697400-38699400	Enhancers	Brain Hippocampus Middle	brain
50	chr17:38697400-38699400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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