Variant report

Variant	rs2229095
Chromosome Location	chr17:38711222-38711223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
2	chr17:38706823..38713094-chr17:38713465..38718695,10	K562	blood:
3	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
4	chr17:38690730..38692899-chr17:38709121..38712377,3	K562	blood:
5	chr17:38473690..38475489-chr17:38708570..38711777,4	MCF-7	breast:
6	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
7	chr17:38711199..38713464-chr17:38773822..38775935,2	MCF-7	breast:
8	chr17:38687442..38690186-chr17:38709464..38712029,2	K562	blood:
9	chr17:38510612..38512266-chr17:38710510..38713367,2	K562	blood:
10	chr17:38543498..38545581-chr17:38709876..38712151,2	MCF-7	breast:
11	chr17:38690730..38694650-chr17:38709121..38712377,6	K562	blood:
12	chr17:38572434..38575339-chr17:38710505..38712270,2	MCF-7	breast:
13	chr17:38518803..38520429-chr17:38710279..38712720,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000131747	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000126353	Chromatin interaction
ENSG00000183153	Chromatin interaction
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1018953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574663	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3136687	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3136689	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136690	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136697	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs475298	1.00[JPT][hapmap]
rs4890086	1.00[JPT][hapmap]
rs6503543	1.00[JPT][hapmap]
rs7221799	1.00[JPT][hapmap]
rs896136	1.00[JPT][hapmap]
rs921394	1.00[JPT][hapmap]
rs9675320	1.00[JPT][hapmap]
rs9901908	1.00[JPT][hapmap]
rs9912358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38703200-38714400	Enhancers	Lung	lung
2	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
3	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
4	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
5	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
6	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr17:38703600-38717200	Enhancers	Placenta	Placenta
8	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
9	chr17:38704200-38713000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:38704200-38713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr17:38705200-38712000	Enhancers	Ovary	ovary
12	chr17:38706400-38711600	Enhancers	Fetal Heart	heart
13	chr17:38708000-38711600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr17:38708400-38712000	Enhancers	Right Ventricle	heart
15	chr17:38708400-38716200	Genic enhancers	Primary B cells from peripheral blood	blood
16	chr17:38708400-38716400	Genic enhancers	Fetal Thymus	thymus
17	chr17:38708800-38711400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:38708800-38712600	Weak transcription	HUVEC	blood vessel
19	chr17:38708800-38713800	Weak transcription	Psoas Muscle	Psoas
20	chr17:38709000-38711800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr17:38709000-38717200	Enhancers	NHDF-Ad	bronchial
22	chr17:38709000-38718200	Enhancers	Primary hematopoietic stem cells	blood
23	chr17:38709200-38711800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:38709400-38711800	Genic enhancers	Spleen	Spleen
25	chr17:38709400-38716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr17:38709600-38712800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:38709600-38715000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr17:38709800-38716000	Genic enhancers	GM12878-XiMat	blood
29	chr17:38710000-38716200	Genic enhancers	A549	lung
30	chr17:38710200-38711400	Enhancers	Gastric	stomach
31	chr17:38710200-38711400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr17:38710200-38711600	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
33	chr17:38710200-38711600	Enhancers	Pancreas	Pancrea
34	chr17:38710200-38712200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:38710400-38712000	Genic enhancers	Primary B cells from cord blood	blood
36	chr17:38710400-38712000	Enhancers	Right Atrium	heart
37	chr17:38710400-38713400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr17:38710400-38713400	Weak transcription	Brain Germinal Matrix	brain
39	chr17:38710400-38713600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr17:38710400-38714800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr17:38710400-38715800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr17:38710600-38711400	Enhancers	Brain Angular Gyrus	brain
43	chr17:38710600-38711400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr17:38710600-38711600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr17:38710600-38711600	Enhancers	HepG2	liver
46	chr17:38710600-38711800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr17:38710600-38712800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr17:38710600-38713000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr17:38710600-38713000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr17:38710600-38713600	Weak transcription	Small Intestine	intestine

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