Variant report

Variant	rs3136690
Chromosome Location	chr17:38714141-38714142
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38703368..38705067-chr17:38713048..38715001,2	K562	blood:
2	chr17:38712577..38714352-chr17:39693268..39695471,2	MCF-7	breast:
3	chr17:38713773..38716698-chr17:38730712..38732602,3	MCF-7	breast:
4	chr17:38689494..38692182-chr17:38712855..38714426,2	K562	blood:
5	chr17:38598881..38602329-chr17:38713858..38720847,8	MCF-7	breast:
6	chr17:38713632..38715686-chr17:38776648..38778341,2	MCF-7	breast:
7	chr17:38517567..38521962-chr17:38714079..38718167,6	K562	blood:
8	chr17:38518077..38521962-chr17:38713124..38716823,5	K562	blood:
9	chr17:38698688..38701076-chr17:38713694..38715227,2	K562	blood:
10	chr17:38713035..38715180-chr17:39833865..39836116,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000141753	Chromatin interaction
ENSG00000183153	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1018953	1.00[EUR][1000 genomes]
rs2229095	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136689	1.00[EUR][1000 genomes]
rs3136694	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136695	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136697	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9912358	0.90[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38703200-38714400	Enhancers	Lung	lung
2	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
3	chr17:38703600-38717200	Enhancers	Placenta	Placenta
4	chr17:38708400-38716200	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr17:38708400-38716400	Genic enhancers	Fetal Thymus	thymus
6	chr17:38709000-38717200	Enhancers	NHDF-Ad	bronchial
7	chr17:38709000-38718200	Enhancers	Primary hematopoietic stem cells	blood
8	chr17:38709400-38716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr17:38709600-38715000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:38709800-38716000	Genic enhancers	GM12878-XiMat	blood
11	chr17:38710000-38716200	Genic enhancers	A549	lung
12	chr17:38710400-38714800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:38710400-38715800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
14	chr17:38710600-38714800	Weak transcription	Fetal Kidney	kidney
15	chr17:38710600-38716000	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr17:38710600-38716200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr17:38710600-38717200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr17:38710800-38715200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr17:38710800-38715200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr17:38710800-38715600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:38710800-38715600	Weak transcription	HMEC	breast
22	chr17:38710800-38716200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr17:38710800-38716200	Weak transcription	Liver	Liver
24	chr17:38711000-38714200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr17:38711000-38714600	Enhancers	K562	blood
26	chr17:38711000-38715000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr17:38711000-38715400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr17:38711000-38716200	Weak transcription	Stomach Mucosa	stomach
29	chr17:38711400-38716400	Weak transcription	Brain Anterior Caudate	brain
30	chr17:38711400-38716400	Weak transcription	Brain Substantia Nigra	brain
31	chr17:38711600-38714200	Weak transcription	Colon Smooth Muscle	Colon
32	chr17:38711600-38715400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr17:38711600-38715600	Weak transcription	Pancreas	Pancrea
34	chr17:38711800-38714800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr17:38712000-38715800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr17:38712400-38714200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:38712400-38717200	Enhancers	Right Ventricle	heart
38	chr17:38712400-38717400	Enhancers	Fetal Stomach	stomach
39	chr17:38712600-38714200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr17:38712600-38714600	Enhancers	HUVEC	blood vessel
41	chr17:38712600-38714800	Flanking Active TSS	Dnd41	blood
42	chr17:38712600-38716400	Enhancers	HepG2	liver
43	chr17:38712600-38717200	Enhancers	Fetal Lung	lung
44	chr17:38712600-38717400	Enhancers	Fetal Heart	heart
45	chr17:38712800-38714200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:38712800-38714200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr17:38712800-38714400	Enhancers	Brain Hippocampus Middle	brain
48	chr17:38712800-38714400	Enhancers	Left Ventricle	heart
49	chr17:38712800-38714400	Genic enhancers	Thymus	Thymus
50	chr17:38712800-38716400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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