Variant report

Variant	rs3136689
Chromosome Location	chr17:38715102-38715103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38682450..38685417-chr17:38714288..38716335,2	K562	blood:
2	chr17:38713773..38716698-chr17:38730712..38732602,3	MCF-7	breast:
3	chr17:38598881..38602329-chr17:38713858..38720847,8	MCF-7	breast:
4	chr17:38713632..38715686-chr17:38776648..38778341,2	MCF-7	breast:
5	chr17:38517567..38521962-chr17:38714079..38718167,6	K562	blood:
6	chr17:38642574..38644263-chr17:38714423..38716746,2	K562	blood:
7	chr17:38642763..38644324-chr17:38714423..38717219,2	K562	blood:
8	chr17:38514408..38518002-chr17:38714529..38716842,3	MCF-7	breast:
9	chr17:38518077..38521962-chr17:38713124..38716823,5	K562	blood:
10	chr17:38698688..38701076-chr17:38713694..38715227,2	K562	blood:
11	chr17:38713035..38715180-chr17:39833865..39836116,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000183153	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000266208	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11574663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11574665	0.94[ASN][1000 genomes]
rs2229095	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3136690	1.00[EUR][1000 genomes]
rs3136694	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136695	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136696	1.00[EUR][1000 genomes]
rs3136697	1.00[EUR][1000 genomes]
rs475298	1.00[JPT][hapmap]
rs4890086	1.00[JPT][hapmap]
rs6503543	1.00[JPT][hapmap]
rs7221799	1.00[JPT][hapmap]
rs896136	1.00[JPT][hapmap]
rs921394	1.00[JPT][hapmap]
rs9675320	1.00[JPT][hapmap]
rs9901908	1.00[JPT][hapmap]
rs9912358	1.00[CEU][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
2	chr17:38703600-38717200	Enhancers	Placenta	Placenta
3	chr17:38708400-38716200	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr17:38708400-38716400	Genic enhancers	Fetal Thymus	thymus
5	chr17:38709000-38717200	Enhancers	NHDF-Ad	bronchial
6	chr17:38709000-38718200	Enhancers	Primary hematopoietic stem cells	blood
7	chr17:38709400-38716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr17:38709800-38716000	Genic enhancers	GM12878-XiMat	blood
9	chr17:38710000-38716200	Genic enhancers	A549	lung
10	chr17:38710400-38715800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:38710600-38716000	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr17:38710600-38716200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr17:38710600-38717200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr17:38710800-38715200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr17:38710800-38715200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr17:38710800-38715600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:38710800-38715600	Weak transcription	HMEC	breast
18	chr17:38710800-38716200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:38710800-38716200	Weak transcription	Liver	Liver
20	chr17:38711000-38715400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr17:38711000-38716200	Weak transcription	Stomach Mucosa	stomach
22	chr17:38711400-38716400	Weak transcription	Brain Anterior Caudate	brain
23	chr17:38711400-38716400	Weak transcription	Brain Substantia Nigra	brain
24	chr17:38711600-38715400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr17:38711600-38715600	Weak transcription	Pancreas	Pancrea
26	chr17:38712000-38715800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr17:38712400-38717200	Enhancers	Right Ventricle	heart
28	chr17:38712400-38717400	Enhancers	Fetal Stomach	stomach
29	chr17:38712600-38716400	Enhancers	HepG2	liver
30	chr17:38712600-38717200	Enhancers	Fetal Lung	lung
31	chr17:38712600-38717400	Enhancers	Fetal Heart	heart
32	chr17:38712800-38716400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr17:38713000-38717200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:38713000-38717200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr17:38713200-38716400	Enhancers	Colonic Mucosa	Colon
36	chr17:38713400-38715200	Enhancers	Brain Germinal Matrix	brain
37	chr17:38713400-38716400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr17:38713600-38715600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr17:38713600-38715800	Genic enhancers	Spleen	Spleen
40	chr17:38713600-38716400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr17:38713600-38716400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr17:38713600-38716400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr17:38713600-38716400	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr17:38713600-38716800	Enhancers	Right Atrium	heart
45	chr17:38713800-38716000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr17:38713800-38716000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr17:38713800-38716400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:38713800-38716600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
49	chr17:38713800-38716800	Enhancers	NHLF	lung
50	chr17:38713800-38719600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links