Variant report

Variant	rs3136695
Chromosome Location	chr17:38708691-38708692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
2	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
3	chr17:38706823..38713094-chr17:38713465..38718695,10	K562	blood:
4	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
5	chr17:38705923..38708848-chr17:38793584..38795694,2	K562	blood:
6	chr17:38704352..38709633-chr17:38730788..38735534,10	MCF-7	breast:
7	chr17:38705642..38709928-chr17:38772338..38775854,5	MCF-7	breast:
8	chr17:38598113..38601965-chr17:38705104..38709206,8	MCF-7	breast:
9	chr17:38473690..38475489-chr17:38708570..38711777,4	MCF-7	breast:
10	chr17:38707503..38711120-chr17:38769935..38775644,8	MCF-7	breast:
11	chr17:38708432..38709405-chr17:38732073..38732751,2	MCF-7	breast:
12	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
13	chr17:38569573..38571773-chr17:38707489..38709886,2	MCF-7	breast:
14	chr17:38604706..38605549-chr17:38707773..38708693,3	MCF-7	breast:
15	chr17:38632022..38634097-chr17:38707502..38709071,2	MCF-7	breast:
16	chr17:38706452..38708820-chr17:39844155..39847106,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000073584	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000126353	Chromatin interaction
ENSG00000141753	Chromatin interaction
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1018953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574663	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2229095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136687	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3136689	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136690	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136697	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs475298	1.00[JPT][hapmap]
rs4890086	1.00[JPT][hapmap]
rs6503543	1.00[JPT][hapmap]
rs7221799	1.00[JPT][hapmap]
rs896136	1.00[JPT][hapmap]
rs921394	1.00[JPT][hapmap]
rs9675320	1.00[JPT][hapmap]
rs9901908	1.00[JPT][hapmap]
rs9912358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:38701600-38709000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:38702000-38710200	Weak transcription	Gastric	stomach
6	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:38703000-38708800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
11	chr17:38703200-38714400	Enhancers	Lung	lung
12	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
13	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
15	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
16	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
17	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
18	chr17:38703600-38708800	Enhancers	Spleen	Spleen
19	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr17:38703600-38717200	Enhancers	Placenta	Placenta
21	chr17:38703800-38709600	Enhancers	Adipose Nuclei	Adipose
22	chr17:38703800-38710200	Enhancers	Right Atrium	heart
23	chr17:38703800-38710200	Enhancers	NHLF	lung
24	chr17:38703800-38711000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
26	chr17:38704200-38709000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr17:38704200-38709000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr17:38704200-38709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:38704200-38709600	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr17:38704200-38709800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:38704200-38713000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr17:38704200-38713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr17:38704400-38709400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr17:38704600-38711200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr17:38705000-38709600	Enhancers	Dnd41	blood
36	chr17:38705000-38711000	Enhancers	Fetal Lung	lung
37	chr17:38705000-38711200	Enhancers	Colonic Mucosa	Colon
38	chr17:38705200-38712000	Enhancers	Ovary	ovary
39	chr17:38706000-38708800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr17:38706000-38709400	Weak transcription	Fetal Intestine Large	intestine
41	chr17:38706000-38709600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr17:38706000-38709800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr17:38706000-38710200	Weak transcription	Pancreas	Pancrea
44	chr17:38706200-38709000	Enhancers	Hela-S3	cervix
45	chr17:38706200-38709200	Weak transcription	K562	blood
46	chr17:38706200-38709400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr17:38706200-38709800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr17:38706200-38710200	Weak transcription	Stomach Mucosa	stomach
49	chr17:38706400-38708800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr17:38706400-38710000	Weak transcription	HMEC	breast

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