Variant report

Variant	rs3136694
Chromosome Location	chr17:38709130-38709131
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
2	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
3	chr17:38706823..38713094-chr17:38713465..38718695,10	K562	blood:
4	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
5	chr17:38690730..38692899-chr17:38709121..38712377,3	K562	blood:
6	chr17:38704352..38709633-chr17:38730788..38735534,10	MCF-7	breast:
7	chr17:38705642..38709928-chr17:38772338..38775854,5	MCF-7	breast:
8	chr17:38598113..38601965-chr17:38705104..38709206,8	MCF-7	breast:
9	chr17:38473690..38475489-chr17:38708570..38711777,4	MCF-7	breast:
10	chr17:38604656..38605443-chr17:38708802..38709406,3	MCF-7	breast:
11	chr17:38708759..38709416-chr17:38731975..38733102,5	MCF-7	breast:
12	chr17:38707503..38711120-chr17:38769935..38775644,8	MCF-7	breast:
13	chr17:38708432..38709405-chr17:38732073..38732751,2	MCF-7	breast:
14	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
15	chr17:38569573..38571773-chr17:38707489..38709886,2	MCF-7	breast:
16	chr17:38708759..38709357-chr17:38731975..38733102,4	MCF-7	breast:
17	chr17:38690730..38694650-chr17:38709121..38712377,6	K562	blood:
18	chr17:38599314..38601066-chr17:38708764..38710479,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000126353	Chromatin interaction
ENSG00000141753	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1018953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11574663	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2229095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136687	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3136689	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3136690	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136696	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136697	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs475298	1.00[JPT][hapmap]
rs4890086	1.00[JPT][hapmap]
rs6503543	1.00[JPT][hapmap]
rs7221799	1.00[JPT][hapmap]
rs896136	1.00[JPT][hapmap]
rs921394	1.00[JPT][hapmap]
rs9675320	1.00[JPT][hapmap]
rs9901908	1.00[JPT][hapmap]
rs9912358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr17:38702000-38710200	Weak transcription	Gastric	stomach
5	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
9	chr17:38703200-38714400	Enhancers	Lung	lung
10	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
11	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
13	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
14	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
15	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
16	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:38703600-38717200	Enhancers	Placenta	Placenta
18	chr17:38703800-38709600	Enhancers	Adipose Nuclei	Adipose
19	chr17:38703800-38710200	Enhancers	Right Atrium	heart
20	chr17:38703800-38710200	Enhancers	NHLF	lung
21	chr17:38703800-38711000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr17:38703800-38711600	Enhancers	Colon Smooth Muscle	Colon
23	chr17:38704200-38709400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:38704200-38709600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr17:38704200-38709800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr17:38704200-38713000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr17:38704200-38713200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr17:38704400-38709400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr17:38704600-38711200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr17:38705000-38709600	Enhancers	Dnd41	blood
31	chr17:38705000-38711000	Enhancers	Fetal Lung	lung
32	chr17:38705000-38711200	Enhancers	Colonic Mucosa	Colon
33	chr17:38705200-38712000	Enhancers	Ovary	ovary
34	chr17:38706000-38709400	Weak transcription	Fetal Intestine Large	intestine
35	chr17:38706000-38709600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:38706000-38709800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:38706000-38710200	Weak transcription	Pancreas	Pancrea
38	chr17:38706200-38709200	Weak transcription	K562	blood
39	chr17:38706200-38709400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr17:38706200-38709800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr17:38706200-38710200	Weak transcription	Stomach Mucosa	stomach
42	chr17:38706400-38710000	Weak transcription	HMEC	breast
43	chr17:38706400-38711600	Enhancers	Fetal Heart	heart
44	chr17:38706800-38711000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:38707200-38709200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:38707200-38709600	Weak transcription	GM12878-XiMat	blood
47	chr17:38707200-38710400	Genic enhancers	Primary T cells from cord blood	blood
48	chr17:38707800-38709800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr17:38707800-38709800	Genic enhancers	Thymus	Thymus
50	chr17:38707800-38710000	Enhancers	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links