Variant report

Variant	rs3136696
Chromosome Location	chr17:38705535-38705536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38702522..38704504-chr17:38705149..38707900,2	MCF-7	breast:
2	chr17:38673009..38676029-chr17:38703569..38707305,5	MCF-7	breast:
3	chr17:38705264..38705952-chr17:38738284..38739171,2	MCF-7	breast:
4	chr17:38705221..38706075-chr17:38732221..38733263,5	MCF-7	breast:
5	chr17:38703976..38705851-chr17:38737210..38738794,2	MCF-7	breast:
6	chr17:38676325..38680650-chr17:38704875..38709448,7	MCF-7	breast:
7	chr17:38705403..38706124-chr17:38732246..38732916,4	MCF-7	breast:
8	chr17:38597366..38608449-chr17:38702297..38713586,48	MCF-7	breast:
9	chr17:38466291..38480319-chr17:38700155..38712986,33	MCF-7	breast:
10	chr17:38705153..38706254-chr17:38732050..38733263,7	MCF-7	breast:
11	chr17:38704352..38709633-chr17:38730788..38735534,10	MCF-7	breast:
12	chr17:38598113..38601965-chr17:38705104..38709206,8	MCF-7	breast:
13	chr17:38705213..38706080-chr17:39571895..39572778,2	MCF-7	breast:
14	chr17:38695377..38701983-chr17:38704174..38712040,12	MCF-7	breast:
15	chr17:38653160..38655925-chr17:38703995..38706258,2	MCF-7	breast:
16	chr17:38604542..38605519-chr17:38705442..38706206,4	MCF-7	breast:
17	chr17:38689023..38690777-chr17:38705235..38707470,2	MCF-7	breast:
18	chr17:38694812..38700047-chr17:38702402..38706263,6	K562	blood:
19	chr17:38703124..38707421-chr17:38736644..38740073,5	MCF-7	breast:
20	chr17:38705486..38706123-chr17:38843516..38844296,2	MCF-7	breast:
21	chr17:38705264..38705771-chr17:38738284..38738815,2	MCF-7	breast:
22	chr17:38604673..38605386-chr17:38705138..38706045,2	MCF-7	breast:
23	chr17:38703286..38705686-chr17:39683987..39687588,4	MCF-7	breast:
24	chr17:38481232..38483242-chr17:38705290..38708203,2	MCF-7	breast:
25	chr17:38705204..38706104-chr17:38732247..38733122,6	MCF-7	breast:
26	chr17:38604703..38605611-chr17:38705194..38706100,5	MCF-7	breast:
27	chr17:38604638..38605611-chr17:38705194..38706100,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266088	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000171345	Chromatin interaction
ENSG00000141753	Chromatin interaction

rs_ID	r²[population]
rs1018953	1.00[EUR][1000 genomes]
rs2229095	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136689	1.00[EUR][1000 genomes]
rs3136690	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136694	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136695	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3136697	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912358	0.95[ASN][1000 genomes]

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38698000-38708400	Enhancers	Fetal Thymus	thymus
2	chr17:38698200-38708200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr17:38699400-38710200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr17:38699600-38707800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:38699600-38709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:38701400-38708000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:38701400-38708000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:38701600-38709000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:38702000-38709200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr17:38702000-38710200	Weak transcription	Gastric	stomach
11	chr17:38702200-38710000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr17:38702400-38710000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:38703000-38708400	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:38703000-38708800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:38703000-38709200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:38703000-38709600	Enhancers	Primary B cells from cord blood	blood
17	chr17:38703200-38705800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:38703200-38706200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr17:38703200-38714400	Enhancers	Lung	lung
20	chr17:38703200-38716800	Enhancers	Fetal Muscle Leg	muscle
21	chr17:38703400-38705600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr17:38703400-38705800	Enhancers	NHEK	skin
23	chr17:38703400-38706000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr17:38703400-38706200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr17:38703400-38706200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr17:38703400-38707200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr17:38703400-38707200	Enhancers	GM12878-XiMat	blood
28	chr17:38703400-38707400	Enhancers	HSMMtube	muscle
29	chr17:38703400-38708400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr17:38703400-38711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr17:38703400-38711200	Enhancers	Fetal Stomach	stomach
32	chr17:38703400-38712000	Enhancers	Esophagus	oesophagus
33	chr17:38703400-38712400	Enhancers	Left Ventricle	heart
34	chr17:38703400-38713400	Enhancers	Fetal Muscle Trunk	muscle
35	chr17:38703600-38705600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:38703600-38705800	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr17:38703600-38706200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr17:38703600-38706400	Enhancers	Duodenum Mucosa	Duodenum
39	chr17:38703600-38706600	Enhancers	Right Ventricle	heart
40	chr17:38703600-38706800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr17:38703600-38707800	Enhancers	NHDF-Ad	bronchial
42	chr17:38703600-38708000	Enhancers	Rectal Smooth Muscle	rectum
43	chr17:38703600-38708400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr17:38703600-38708800	Enhancers	Spleen	Spleen
45	chr17:38703600-38711800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr17:38703600-38717200	Enhancers	Placenta	Placenta
47	chr17:38703800-38706200	Enhancers	Stomach Mucosa	stomach
48	chr17:38703800-38709600	Enhancers	Adipose Nuclei	Adipose
49	chr17:38703800-38710200	Enhancers	Right Atrium	heart
50	chr17:38703800-38710200	Enhancers	NHLF	lung

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