Variant report

Variant	rs16968237
Chromosome Location	chr16:64992546-64992547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1124695	0.91[AMR][1000 genomes]
rs1130821	0.91[AMR][1000 genomes]
rs12597175	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1402020	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496397	0.83[ASN][1000 genomes]
rs1520238	0.85[ASN][1000 genomes]
rs1554401	0.91[AMR][1000 genomes]
rs16942787	0.90[AMR][1000 genomes]
rs16956488	0.83[ASN][1000 genomes]
rs16968172	0.83[ASN][1000 genomes]
rs3785315	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58004552	0.91[AMR][1000 genomes]
rs59407170	0.91[AMR][1000 genomes]
rs59614634	0.90[AMR][1000 genomes]
rs60424410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190608	0.82[AMR][1000 genomes]
rs73575990	0.91[AMR][1000 genomes]
rs8050545	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
4	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
8	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
10	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
11	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
12	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
13	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
14	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
16	chr16:64985400-64994200	Weak transcription	Fetal Muscle Leg	muscle
17	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
20	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr16:64986200-65003000	Weak transcription	Brain Hippocampus Middle	brain
22	chr16:64986200-65004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:64986400-65004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr16:64986400-65004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr16:64987000-65002600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:64987000-65003200	Weak transcription	NHLF	lung
27	chr16:64987200-64992800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:64987400-64994400	Weak transcription	HSMMtube	muscle
29	chr16:64987400-64997400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:64988200-64995000	Strong transcription	Fetal Lung	lung
31	chr16:64988600-64996800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr16:64988600-64999400	Weak transcription	Fetal Kidney	kidney
33	chr16:64988800-64994400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr16:64988800-64996600	Strong transcription	Osteobl	bone
35	chr16:64989600-65001000	Weak transcription	Fetal Stomach	stomach
36	chr16:64989800-64994400	Strong transcription	NH-A	brain
37	chr16:64990000-64994600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr16:64990200-64994800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr16:64990200-64995200	Strong transcription	HSMM	muscle
40	chr16:64990400-64992800	Strong transcription	NHDF-Ad	bronchial
41	chr16:64991200-64992800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr16:64991200-64996000	Weak transcription	Colon Smooth Muscle	Colon
43	chr16:64991200-65004200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr16:64991400-64992600	Strong transcription	Ovary	ovary
45	chr16:64991400-64999200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum

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