Variant report

Variant	rs7190608
Chromosome Location	chr16:65032846-65032847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:65032279-65032993	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
CDH11	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10500505	0.81[ASN][1000 genomes]
rs11075558	0.81[ASN][1000 genomes]
rs11075559	0.81[ASN][1000 genomes]
rs1124695	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1130821	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12596107	0.81[ASN][1000 genomes]
rs12597175	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12599626	0.81[ASN][1000 genomes]
rs13334375	0.81[ASN][1000 genomes]
rs1390641	0.81[ASN][1000 genomes]
rs1402020	0.82[AMR][1000 genomes]
rs1496397	0.86[ASN][1000 genomes]
rs1520238	0.88[ASN][1000 genomes]
rs1554401	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16942787	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16956488	0.87[ASN][1000 genomes]
rs16968172	0.87[ASN][1000 genomes]
rs16968237	0.82[AMR][1000 genomes]
rs1896754	0.81[ASN][1000 genomes]
rs3785315	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57879848	0.81[ASN][1000 genomes]
rs58004552	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58245127	0.81[ASN][1000 genomes]
rs59407170	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59614634	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60424410	0.82[AMR][1000 genomes]
rs73575990	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73579797	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8050545	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
4	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
6	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
7	chr16:65018000-65035600	Strong transcription	HSMM	muscle
8	chr16:65018800-65035600	Strong transcription	Osteobl	bone
9	chr16:65021000-65034200	Weak transcription	Adipose Nuclei	Adipose
10	chr16:65021200-65038200	Weak transcription	Brain Germinal Matrix	brain
11	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
12	chr16:65022200-65037200	Weak transcription	Fetal Intestine Large	intestine
13	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
14	chr16:65023600-65039600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:65024400-65035000	Weak transcription	Brain Substantia Nigra	brain
16	chr16:65025200-65037200	Weak transcription	Spleen	Spleen
17	chr16:65025800-65033000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr16:65026000-65035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr16:65026000-65037800	Weak transcription	Aorta	Aorta
21	chr16:65026000-65038600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr16:65026200-65033600	Weak transcription	Placenta	Placenta
23	chr16:65026200-65035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr16:65026200-65035200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr16:65026600-65035200	Weak transcription	Brain Angular Gyrus	brain
26	chr16:65026800-65035000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr16:65027000-65036000	Weak transcription	Fetal Brain Female	brain
28	chr16:65027200-65035600	Weak transcription	HUVEC	blood vessel
29	chr16:65029000-65037600	Weak transcription	Fetal Kidney	kidney
30	chr16:65029800-65035600	Strong transcription	NHDF-Ad	bronchial
31	chr16:65029800-65035800	Strong transcription	Fetal Muscle Leg	muscle
32	chr16:65030000-65034600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr16:65030000-65034800	Strong transcription	Fetal Stomach	stomach
34	chr16:65030000-65035800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr16:65030200-65035200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr16:65030200-65035600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr16:65030400-65034400	Strong transcription	NHLF	lung
38	chr16:65030400-65035400	Strong transcription	NH-A	brain
39	chr16:65030600-65034800	Strong transcription	HSMMtube	muscle
40	chr16:65030800-65033000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr16:65030800-65033200	Strong transcription	Stomach Smooth Muscle	stomach
42	chr16:65032200-65043400	Weak transcription	Fetal Brain Male	brain
43	chr16:65032400-65033000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr16:65032400-65035800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr16:65032400-65037800	Weak transcription	HMEC	breast
46	chr16:65032600-65035200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr16:65032600-65035200	Weak transcription	Brain Hippocampus Middle	brain
48	chr16:65032600-65037600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr16:65032600-65037600	Weak transcription	Lung	lung
50	chr16:65032600-65038400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links