Variant report

Variant	rs16968674
Chromosome Location	chr15:77406181-77406182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77397830..77402873-chr15:77403837..77409871,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16968683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968688	1.00[AMR][1000 genomes]
rs16968690	1.00[AMR][1000 genomes]
rs16968703	1.00[AMR][1000 genomes]
rs16968706	1.00[AMR][1000 genomes]
rs16968724	1.00[AMR][1000 genomes]
rs16968728	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16968741	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16968758	1.00[AMR][1000 genomes]
rs17384231	1.00[AMR][1000 genomes]
rs1823101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77390400-77406400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:77394600-77413400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr15:77397600-77406200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:77397600-77411200	Weak transcription	HUVEC	blood vessel
5	chr15:77397800-77411400	Weak transcription	Fetal Thymus	thymus
6	chr15:77398000-77411600	Weak transcription	Fetal Brain Female	brain
7	chr15:77400000-77411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:77400200-77406400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr15:77400200-77411400	Weak transcription	Stomach Mucosa	stomach
10	chr15:77400200-77424200	Weak transcription	Esophagus	oesophagus
11	chr15:77400200-77427200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:77400200-77429000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:77400400-77411400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:77400400-77413000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:77400400-77428600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:77400600-77406400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:77400600-77406400	Weak transcription	Brain Anterior Caudate	brain
18	chr15:77400600-77406400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:77400600-77406600	Weak transcription	Brain Angular Gyrus	brain
20	chr15:77400600-77411400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:77400600-77411400	Weak transcription	Brain Substantia Nigra	brain
22	chr15:77400600-77411400	Weak transcription	Small Intestine	intestine
23	chr15:77400600-77425400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:77400800-77406200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:77400800-77406400	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:77401000-77411600	Weak transcription	Fetal Kidney	kidney
27	chr15:77401400-77406400	Weak transcription	Ovary	ovary
28	chr15:77401600-77449600	Weak transcription	Colonic Mucosa	Colon
29	chr15:77401800-77411400	Weak transcription	NH-A	brain
30	chr15:77402000-77407600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:77402400-77406400	Weak transcription	Liver	Liver
32	chr15:77402800-77412600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:77403000-77407600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:77403800-77407400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr15:77404200-77406800	Strong transcription	Fetal Lung	lung
36	chr15:77404200-77407000	Genic enhancers	Fetal Muscle Leg	muscle
37	chr15:77404200-77407400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:77404200-77407400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr15:77404200-77407600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:77404200-77407600	Strong transcription	Fetal Stomach	stomach
41	chr15:77404200-77407800	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:77404200-77408200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:77404200-77430800	Weak transcription	Thymus	Thymus
44	chr15:77404400-77406400	Weak transcription	Gastric	stomach
45	chr15:77404400-77406400	Enhancers	HSMMtube	muscle
46	chr15:77404400-77409000	Weak transcription	K562	blood
47	chr15:77404600-77406200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:77404600-77406600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:77404600-77406600	Genic enhancers	NHDF-Ad	bronchial
50	chr15:77404600-77411600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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