Variant report

Variant	rs16968683
Chromosome Location	chr15:77436103-77436104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16968674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968688	1.00[AMR][1000 genomes]
rs16968690	1.00[AMR][1000 genomes]
rs16968703	1.00[AMR][1000 genomes]
rs16968706	1.00[AMR][1000 genomes]
rs16968724	1.00[AMR][1000 genomes]
rs16968728	1.00[AMR][1000 genomes]
rs16968741	1.00[AMR][1000 genomes]
rs16968758	1.00[AMR][1000 genomes]
rs17384231	1.00[AMR][1000 genomes]
rs1823101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77401600-77449600	Weak transcription	Colonic Mucosa	Colon
2	chr15:77411800-77449400	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:77419600-77436400	Weak transcription	NHEK	skin
4	chr15:77419600-77449400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:77419800-77436800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:77420400-77436600	Weak transcription	Fetal Heart	heart
7	chr15:77420400-77449800	Weak transcription	Psoas Muscle	Psoas
8	chr15:77421400-77436400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:77426000-77436200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:77426000-77436800	Weak transcription	Ovary	ovary
11	chr15:77426000-77437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:77426000-77437600	Weak transcription	Gastric	stomach
13	chr15:77426000-77449600	Weak transcription	Brain Angular Gyrus	brain
14	chr15:77426000-77452400	Weak transcription	Pancreas	Pancrea
15	chr15:77426200-77453200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr15:77426400-77436400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:77427600-77460600	Weak transcription	Right Ventricle	heart
18	chr15:77428000-77449600	Weak transcription	Primary T cells from cord blood	blood
19	chr15:77432800-77448400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:77433200-77436400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:77433200-77436600	Weak transcription	Fetal Lung	lung
22	chr15:77433200-77449200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:77433400-77436400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:77433400-77436600	Weak transcription	Fetal Stomach	stomach
25	chr15:77433400-77449400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:77433400-77449400	Weak transcription	Brain Hippocampus Middle	brain
27	chr15:77433400-77449600	Weak transcription	Left Ventricle	heart
28	chr15:77433600-77448400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:77433800-77436200	Weak transcription	Fetal Kidney	kidney
30	chr15:77434200-77436200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:77434200-77460400	Weak transcription	Fetal Brain Male	brain
32	chr15:77434400-77437000	Weak transcription	HepG2	liver
33	chr15:77434800-77436600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:77434800-77436800	Strong transcription	Brain Cingulate Gyrus	brain
35	chr15:77434800-77438000	Strong transcription	Primary B cells from cord blood	blood
36	chr15:77434800-77449200	Weak transcription	Brain Anterior Caudate	brain
37	chr15:77434800-77449200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:77434800-77449400	Weak transcription	Liver	Liver
39	chr15:77435000-77436600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr15:77435000-77436600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:77435000-77438600	Enhancers	Fetal Intestine Small	intestine
42	chr15:77435000-77448400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:77435000-77448600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:77435000-77449200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:77435200-77436400	Enhancers	HSMMtube	muscle
46	chr15:77435200-77439800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:77435400-77436200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:77435400-77436200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:77435400-77436200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:77435400-77436200	Enhancers	HSMM	muscle

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