Variant report

Variant	rs16968690
Chromosome Location	chr15:77488454-77488455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16968674	1.00[AMR][1000 genomes]
rs16968683	1.00[AMR][1000 genomes]
rs16968688	1.00[AMR][1000 genomes]
rs16968703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968752	1.00[AFR][1000 genomes]
rs16968758	1.00[AMR][1000 genomes]
rs17384231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1823101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:77461600-77496800	Weak transcription	Lung	lung
3	chr15:77467200-77491400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:77469800-77491200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:77469800-77499200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:77471400-77505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:77471800-77491400	Weak transcription	Aorta	Aorta
8	chr15:77472400-77500800	Weak transcription	HSMMtube	muscle
9	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
10	chr15:77474200-77490600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:77476400-77491400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:77479400-77494400	Weak transcription	HepG2	liver
13	chr15:77479600-77490800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:77480400-77492000	Weak transcription	Small Intestine	intestine
15	chr15:77480400-77492000	Weak transcription	Thymus	Thymus
16	chr15:77480400-77528000	Weak transcription	Fetal Stomach	stomach
17	chr15:77480600-77490600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:77480600-77490600	Weak transcription	HSMM	muscle
19	chr15:77480800-77491200	Weak transcription	NH-A	brain
20	chr15:77481000-77490600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr15:77481200-77490400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:77481200-77490800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:77481200-77490800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:77481800-77490400	Weak transcription	Osteobl	bone
25	chr15:77481800-77490600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:77481800-77490800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr15:77481800-77491200	Weak transcription	Primary T cells from cord blood	blood
28	chr15:77481800-77491600	Weak transcription	NHLF	lung
29	chr15:77482000-77490600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:77482000-77490600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:77482000-77490600	Weak transcription	HUVEC	blood vessel
32	chr15:77482000-77506200	Weak transcription	Pancreas	Pancrea
33	chr15:77482200-77490600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:77482200-77490600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr15:77482200-77490800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:77482200-77491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:77482200-77491200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:77482200-77491400	Weak transcription	Dnd41	blood
39	chr15:77482200-77493800	Weak transcription	Right Ventricle	heart
40	chr15:77482200-77504800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:77482200-77528000	Weak transcription	Spleen	Spleen
42	chr15:77482400-77490600	Weak transcription	Adipose Nuclei	Adipose
43	chr15:77482600-77490600	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr15:77482800-77490800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr15:77483200-77490600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:77483200-77490800	Weak transcription	Fetal Lung	lung
47	chr15:77484000-77518800	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:77485000-77491200	Weak transcription	Ovary	ovary
49	chr15:77485200-77491200	Weak transcription	Left Ventricle	heart
50	chr15:77486800-77488600	Enhancers	Brain Germinal Matrix	brain

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