Variant report

Variant	rs16968819
Chromosome Location	chr15:77695353-77695354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77693123..77695708-chr15:77711295..77713388,2	MCF-7	breast:
2	chr15:77694326..77697200-chr15:77709904..77712789,3	MCF-7	breast:
3	chr15:77694098..77696472-chr15:77713805..77715718,2	K562	blood:
4	chr15:77662346..77663859-chr15:77693628..77695822,2	K562	blood:
5	chr15:77695120..77697268-chr15:77709701..77711591,2	K562	blood:
6	chr15:77694198..77696717-chr15:77702430..77705235,2	K562	blood:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction
ENSG00000173517	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16968771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968789	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16968940	1.00[AMR][1000 genomes]
rs72243793	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv1795063	chr15:77628696-77697976	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1800929	chr15:77664889-77697976	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv1792043	chr15:77664901-77708316	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77675000-77709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:77686400-77700000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:77691600-77703000	Weak transcription	Fetal Heart	heart
4	chr15:77692800-77698200	Weak transcription	Primary B cells from cord blood	blood
5	chr15:77694200-77695600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:77694200-77696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:77694600-77695600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:77694600-77695600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:77694800-77695600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:77694800-77695600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr15:77694800-77695800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:77695000-77695400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:77695000-77695400	Enhancers	Adipose Nuclei	Adipose
14	chr15:77695000-77695400	Flanking Active TSS	GM12878-XiMat	blood
15	chr15:77695000-77695400	Flanking Active TSS	NHDF-Ad	bronchial
16	chr15:77695000-77695600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:77695000-77695600	Enhancers	Brain Angular Gyrus	brain
18	chr15:77695000-77695600	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr15:77695000-77695600	Enhancers	HMEC	breast
20	chr15:77695000-77695600	Flanking Active TSS	NH-A	brain
21	chr15:77695000-77695600	Active TSS	NHLF	lung
22	chr15:77695200-77695400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:77695200-77695400	Active TSS	HSMMtube	muscle
24	chr15:77695200-77695600	Enhancers	Brain Substantia Nigra	brain
25	chr15:77695200-77695600	Flanking Active TSS	HSMM	muscle
26	chr15:77695200-77695600	Enhancers	HUVEC	blood vessel
27	chr15:77695200-77695600	Enhancers	K562	blood
28	chr15:77695200-77695600	Flanking Active TSS	Osteobl	bone

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