Variant report

Variant	rs16969052
Chromosome Location	chr15:39753519-39753520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39751402..39753741-chr15:39756620..39758382,2	MCF-7	breast:
2	chr15:39745636..39749475-chr15:39752031..39754404,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16952148	1.00[AMR][1000 genomes]
rs16969021	1.00[AMR][1000 genomes]
rs16969023	1.00[AMR][1000 genomes]
rs16969030	1.00[AMR][1000 genomes]
rs16969032	1.00[AMR][1000 genomes]
rs16969077	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969097	1.00[AMR][1000 genomes]
rs16969108	1.00[AMR][1000 genomes]
rs16969113	1.00[AMR][1000 genomes]
rs4091683	1.00[AMR][1000 genomes]
rs60614142	1.00[AMR][1000 genomes]
rs60827388	1.00[AMR][1000 genomes]
rs73385063	1.00[AMR][1000 genomes]
rs74010137	1.00[AMR][1000 genomes]
rs8030678	1.00[AMR][1000 genomes]
rs9672485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1042824	chr15:39676039-39757222	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv542362	chr15:39676039-39757222	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39748200-39753800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:39748200-39754000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:39748600-39753600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:39748600-39754000	Weak transcription	NHLF	lung
6	chr15:39748800-39753600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:39748800-39753600	Weak transcription	Osteobl	bone
8	chr15:39749400-39754000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:39752400-39753600	Enhancers	Pancreas	Pancrea
10	chr15:39752800-39755200	Enhancers	Fetal Muscle Leg	muscle
11	chr15:39753000-39754200	Enhancers	Fetal Muscle Trunk	muscle
12	chr15:39753000-39755600	Enhancers	NHDF-Ad	bronchial
13	chr15:39753200-39753600	Enhancers	K562	blood
14	chr15:39753200-39753800	Weak transcription	Fetal Heart	heart
15	chr15:39753200-39754000	Weak transcription	Spleen	Spleen
16	chr15:39753200-39754600	Enhancers	Ovary	ovary
17	chr15:39753200-39754600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:39753200-39755200	Enhancers	Adipose Nuclei	Adipose
19	chr15:39753200-39755400	Enhancers	Fetal Stomach	stomach
20	chr15:39753400-39754200	Enhancers	Fetal Lung	lung
21	chr15:39753400-39754200	Enhancers	Small Intestine	intestine
22	chr15:39753400-39754200	Enhancers	HSMM	muscle
23	chr15:39753400-39754400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:39753400-39754400	Enhancers	HSMMtube	muscle
25	chr15:39753400-39754800	Enhancers	Rectal Smooth Muscle	rectum
26	chr15:39753400-39755200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:39753400-39755200	Enhancers	Left Ventricle	heart
28	chr15:39753400-39755200	Enhancers	Right Atrium	heart
29	chr15:39753400-39755200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:39753400-39756000	Enhancers	HUVEC	blood vessel

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