Variant report

Variant	rs74010137
Chromosome Location	chr15:39767372-39767373
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16952148	1.00[AMR][1000 genomes]
rs16969021	1.00[AMR][1000 genomes]
rs16969023	1.00[AMR][1000 genomes]
rs16969030	1.00[AMR][1000 genomes]
rs16969032	1.00[AMR][1000 genomes]
rs16969052	1.00[AMR][1000 genomes]
rs16969077	1.00[AMR][1000 genomes]
rs16969097	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16969108	1.00[AMR][1000 genomes]
rs16969113	1.00[AMR][1000 genomes]
rs4091683	1.00[AMR][1000 genomes]
rs60614142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60827388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385063	1.00[AMR][1000 genomes]
rs8030678	1.00[AMR][1000 genomes]
rs9672485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39759800-39770800	Weak transcription	Stomach Mucosa	stomach
2	chr15:39763000-39767800	Enhancers	Fetal Lung	lung
3	chr15:39763200-39767800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:39765200-39767800	Enhancers	Pancreas	Pancrea
5	chr15:39765200-39767800	Enhancers	HSMM	muscle
6	chr15:39765600-39767800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:39765600-39767800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:39766000-39768000	Enhancers	Fetal Kidney	kidney
9	chr15:39766200-39767800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:39766200-39767800	Enhancers	HUVEC	blood vessel
11	chr15:39766800-39769200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr15:39767000-39772200	Weak transcription	Spleen	Spleen
13	chr15:39767200-39768800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr15:39767200-39768800	Weak transcription	HSMMtube	muscle
15	chr15:39767200-39771400	Weak transcription	Fetal Stomach	stomach
16	chr15:39767200-39772200	Weak transcription	NHDF-Ad	bronchial
17	chr15:39767200-39773200	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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