Variant report

Variant	rs16969738
Chromosome Location	chr15:78651978-78651979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78651423..78654019-chr15:78662111..78664837,3	MCF-7	breast:
2	chr15:78647379..78649715-chr15:78651896..78653984,2	K562	blood:
3	chr15:78631678..78634214-chr15:78650319..78652943,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166426	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11072761	0.86[EUR][1000 genomes]
rs11630269	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11630315	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11631252	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11633242	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11635829	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11637161	1.00[AFR][1000 genomes]
rs11638335	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12443034	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16969741	0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16969743	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2037348	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs35309735	0.86[EUR][1000 genomes]
rs3743085	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3743087	0.86[EUR][1000 genomes]
rs8042502	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8043303	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78634600-78652800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:78640800-78653200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:78641000-78653400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:78645000-78658200	Weak transcription	Right Atrium	heart
5	chr15:78650200-78652600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:78650400-78652000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:78650400-78652000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:78650400-78652200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:78650400-78652800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr15:78650400-78658800	Enhancers	Fetal Muscle Leg	muscle
11	chr15:78651200-78652600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:78651400-78653000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:78651400-78653600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:78651600-78653000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:78651600-78653200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:78651600-78655600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:78651600-78666600	Weak transcription	Pancreas	Pancrea
18	chr15:78651800-78652200	Weak transcription	Fetal Stomach	stomach
19	chr15:78651800-78652800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr15:78651800-78653200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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