Variant report

Variant	rs8043303
Chromosome Location	chr15:78656221-78656222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78654127..78657076-chr15:78665731..78668813,3	MCF-7	breast:
2	chr15:78653965..78657073-chr15:78658751..78661032,3	K562	blood:
3	chr15:78648755..78651653-chr15:78653927..78656682,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11072761	0.86[EUR][1000 genomes]
rs11630269	0.86[EUR][1000 genomes]
rs11630315	0.86[EUR][1000 genomes]
rs11631252	0.86[EUR][1000 genomes]
rs11633242	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs11635829	0.86[EUR][1000 genomes]
rs11636732	1.00[ASW][hapmap]
rs11638335	0.86[EUR][1000 genomes]
rs12443034	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16969738	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16969741	0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16969743	0.86[EUR][1000 genomes]
rs2037348	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs35309735	0.86[EUR][1000 genomes]
rs3743085	0.86[EUR][1000 genomes]
rs3743087	0.86[EUR][1000 genomes]
rs7175441	0.85[AFR][1000 genomes]
rs7183914	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs8042502	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8042615	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78645000-78658200	Weak transcription	Right Atrium	heart
2	chr15:78650400-78658800	Enhancers	Fetal Muscle Leg	muscle
3	chr15:78651600-78666600	Weak transcription	Pancreas	Pancrea
4	chr15:78652000-78660400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:78653400-78658200	Weak transcription	Left Ventricle	heart
6	chr15:78653400-78658400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:78653400-78660400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:78653600-78656600	Weak transcription	Brain Substantia Nigra	brain
9	chr15:78653600-78658200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:78653600-78662400	Weak transcription	Right Ventricle	heart
11	chr15:78654000-78661000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr15:78654400-78657800	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:78654800-78657200	Enhancers	NHDF-Ad	bronchial
14	chr15:78654800-78657400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:78655200-78658200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:78655200-78658200	Weak transcription	Spleen	Spleen
17	chr15:78655200-78658200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr15:78655400-78656400	Weak transcription	Placenta	Placenta
19	chr15:78655400-78660200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:78655600-78657000	Enhancers	Fetal Muscle Trunk	muscle
21	chr15:78655600-78657200	Enhancers	Brain Anterior Caudate	brain
22	chr15:78655600-78659000	Enhancers	Fetal Stomach	stomach
23	chr15:78655800-78657400	Enhancers	Brain Cingulate Gyrus	brain
24	chr15:78656000-78657400	Enhancers	Brain Angular Gyrus	brain
25	chr15:78656200-78656400	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:78656200-78656800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

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