Variant report

Variant	rs35309735
Chromosome Location	chr15:78691012-78691013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78679630..78681837-chr15:78689698..78692156,2	MCF-7	breast:
2	chr15:78686256..78688855-chr15:78690068..78692853,2	K562	blood:
3	chr15:78690617..78693319-chr15:78700290..78702195,2	MCF-7	breast:
4	chr15:78681164..78684060-chr15:78688806..78691444,2	K562	blood:
5	chr15:78689388..78691661-chr15:78857643..78859305,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169684	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11072761	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11630269	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11630315	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11631252	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11633242	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11635829	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11637161	0.83[ASN][1000 genomes]
rs11638335	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11857922	0.95[AFR][1000 genomes]
rs12443034	0.86[EUR][1000 genomes]
rs16969738	0.86[EUR][1000 genomes]
rs16969741	0.86[EUR][1000 genomes]
rs16969743	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3743085	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743087	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8042502	0.86[EUR][1000 genomes]
rs8043303	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1052910	chr15:78608637-78707049	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78667600-78704400	Weak transcription	Lung	lung
2	chr15:78688000-78691600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78688000-78703800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:78688200-78691200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:78688200-78691400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:78688200-78691400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:78688200-78692000	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:78688400-78691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:78688400-78691400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:78688400-78691400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:78688600-78691600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:78688800-78692400	Enhancers	Placenta	Placenta
13	chr15:78689000-78692200	Enhancers	Adipose Nuclei	Adipose
14	chr15:78689200-78692200	Enhancers	Fetal Stomach	stomach
15	chr15:78689600-78692000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:78690000-78691600	Weak transcription	Colonic Mucosa	Colon
17	chr15:78690000-78691600	Weak transcription	Fetal Lung	lung
18	chr15:78690200-78691200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:78690400-78691400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:78690400-78691600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:78690400-78693000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr15:78690600-78691600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:78690600-78691600	Weak transcription	Brain Substantia Nigra	brain
24	chr15:78690800-78691200	Enhancers	Spleen	Spleen
25	chr15:78690800-78692000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
26	chr15:78691000-78691400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:78691000-78691800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:78691000-78692400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr15:78691000-78692600	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links