Variant report

Variant	rs16971576
Chromosome Location	chr15:41464249-41464250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41456615..41459900-chr15:41462571..41464669,4	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs12324568	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13329240	0.93[ASN][1000 genomes]
rs16952331	0.82[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.88[EUR][1000 genomes]
rs16971562	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16971647	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16971651	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16971653	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16971654	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16971734	0.83[EUR][1000 genomes]
rs2083238	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2090826	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2118739	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2305656	0.88[JPT][hapmap]
rs2412607	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2412610	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs28889391	0.82[ASN][1000 genomes]
rs2899014	0.88[EUR][1000 genomes]
rs55787465	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55952963	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56262456	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56815966	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57009745	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57896923	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58060180	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58322837	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58436082	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58851405	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59441380	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59500750	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60789744	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6492995	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7165551	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7166182	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7166581	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7167142	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7168706	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7172299	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7173545	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73394302	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74012251	0.94[EUR][1000 genomes]
rs74012252	0.94[EUR][1000 genomes]
rs74012253	0.90[EUR][1000 genomes]
rs74012255	0.83[EUR][1000 genomes]
rs8025660	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8025916	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8026570	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8029385	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8029694	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8030683	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8030706	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8030712	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8030732	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8030954	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8031542	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs8038103	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038575	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8039060	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8040375	0.90[EUR][1000 genomes]
rs9672272	0.90[EUR][1000 genomes]
rs9672309	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9745300	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9796	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569229	chr15:41361138-41483682	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv904107	chr15:41361138-41493013	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv569230	chr15:41384649-41483682	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv904108	chr15:41384649-41486990	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	nsv904109	chr15:41410705-41481254	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41462600-41468000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr15:41464200-41464600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:41464200-41464800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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