Variant report

Variant	rs74012255
Chromosome Location	chr15:41554587-41554588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41550157..41551774-chr15:41554102..41556216,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs16952331	0.86[ASN][1000 genomes]
rs16971562	0.81[EUR][1000 genomes]
rs16971576	0.83[EUR][1000 genomes]
rs16971647	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16971651	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16971653	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16971654	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16971733	0.89[ASN][1000 genomes]
rs16971734	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16971735	0.88[ASN][1000 genomes]
rs2083238	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2090826	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2118739	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2412607	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2412610	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28417774	0.88[ASN][1000 genomes]
rs28468975	0.88[ASN][1000 genomes]
rs28478807	0.90[ASN][1000 genomes]
rs28626792	0.89[ASN][1000 genomes]
rs2899014	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55787465	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55952963	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56262456	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56815966	0.81[EUR][1000 genomes]
rs57009745	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57896923	0.85[EUR][1000 genomes]
rs58060180	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58436082	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58851405	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6492996	0.94[ASN][1000 genomes]
rs7165551	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7166182	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7166581	0.82[AMR][1000 genomes]
rs7167142	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74012251	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74012252	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74012253	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8025660	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8025916	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8029873	0.87[ASN][1000 genomes]
rs8030033	0.81[ASN][1000 genomes]
rs8030683	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030706	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030712	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030732	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030954	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8031542	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8034073	0.94[ASN][1000 genomes]
rs8036686	0.94[ASN][1000 genomes]
rs9672272	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9672309	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41524200-41554800	Weak transcription	Fetal Thymus	thymus
2	chr15:41524200-41555800	Weak transcription	Aorta	Aorta
3	chr15:41524200-41563800	Weak transcription	Small Intestine	intestine
4	chr15:41524200-41575800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:41524400-41555800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:41524800-41563800	Weak transcription	Esophagus	oesophagus
7	chr15:41525200-41556400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:41525200-41575400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:41525400-41556200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:41525400-41556800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:41525800-41554800	Weak transcription	Dnd41	blood
12	chr15:41525800-41575200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:41526000-41554800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:41526200-41554800	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:41533800-41554600	Weak transcription	Brain Anterior Caudate	brain
16	chr15:41533800-41555000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:41534000-41555200	Weak transcription	Brain Germinal Matrix	brain
18	chr15:41534200-41555200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:41534200-41556400	Weak transcription	Spleen	Spleen
20	chr15:41536600-41573600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:41536800-41555000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr15:41536800-41555200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:41537200-41555000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:41537400-41555000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:41537400-41570800	Weak transcription	Ovary	ovary
26	chr15:41537600-41562800	Weak transcription	Lung	lung
27	chr15:41537800-41554600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:41538200-41555000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:41539400-41555000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:41539400-41555800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:41541600-41554800	Weak transcription	Thymus	Thymus
32	chr15:41542600-41554800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:41542600-41555000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr15:41542600-41555000	Weak transcription	NHLF	lung
35	chr15:41542800-41554800	Weak transcription	NH-A	brain
36	chr15:41542800-41555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:41542800-41572000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:41543000-41575200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:41545000-41554600	Weak transcription	Left Ventricle	heart
40	chr15:41545000-41571400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr15:41549000-41554800	Weak transcription	Fetal Kidney	kidney
42	chr15:41549200-41555400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:41549200-41575200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:41549800-41556200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:41550000-41554800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr15:41550200-41554800	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:41550400-41554600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr15:41550400-41554600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:41550400-41554600	Weak transcription	Brain Hippocampus Middle	brain
50	chr15:41550400-41554600	Weak transcription	HSMM	muscle

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