Variant report

Variant	rs8025660
Chromosome Location	chr15:41500640-41500641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12324568	0.86[EUR][1000 genomes]
rs13329240	0.89[ASN][1000 genomes]
rs16952331	0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971562	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16971576	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16971647	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16971651	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16971653	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16971654	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16971733	0.91[CHD][hapmap]
rs16971734	0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16971735	0.83[CHD][hapmap]
rs2083238	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2090826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2099652	0.83[ASN][1000 genomes]
rs2118739	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2412607	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2412610	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28889391	0.83[ASN][1000 genomes]
rs2899014	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55787465	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55952963	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262456	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56815966	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57009745	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57896923	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58060180	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58322837	0.90[EUR][1000 genomes]
rs58436082	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58851405	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59441380	0.90[EUR][1000 genomes]
rs59500750	0.84[EUR][1000 genomes]
rs60789744	0.90[EUR][1000 genomes]
rs6492995	0.93[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7165551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7166182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7166581	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7167142	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7168706	0.90[EUR][1000 genomes]
rs7172299	0.86[EUR][1000 genomes]
rs7173545	0.84[EUR][1000 genomes]
rs73394302	0.84[EUR][1000 genomes]
rs74012251	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74012252	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74012253	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74012255	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8025916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026570	0.85[EUR][1000 genomes]
rs8029385	0.86[EUR][1000 genomes]
rs8029694	0.80[EUR][1000 genomes]
rs8030683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030706	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030712	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8031542	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8034073	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs8036686	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs8038103	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8038575	0.86[EUR][1000 genomes]
rs8039060	0.84[EUR][1000 genomes]
rs8040375	0.90[EUR][1000 genomes]
rs9672272	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9672309	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9745300	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457120	chr15:41410705-41546631	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv569231	chr15:41410705-41546631	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1039906	chr15:41476209-41518976	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41499800-41500800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:41500200-41501600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:41500400-41501400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:41500400-41501400	Enhancers	HMEC	breast
5	chr15:41500400-41501600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:41500600-41501400	Enhancers	NHEK	skin

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