Variant report

Variant	rs16972012
Chromosome Location	chr15:33833213-33833214
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856567	1.00[CHB][hapmap]
rs16971919	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236140	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17236182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17817299	0.80[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs1821583	1.00[ASN][1000 genomes]
rs41279200	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279202	1.00[ASN][1000 genomes]
rs4281677	1.00[GIH][hapmap]
rs55909166	0.84[EUR][1000 genomes]
rs6495130	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7163256	0.83[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs978338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33794800-33836200	Weak transcription	Aorta	Aorta
2	chr15:33814000-33835600	Weak transcription	Brain Anterior Caudate	brain
3	chr15:33818400-33840800	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:33821800-33836200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:33823800-33844000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:33825600-33837800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:33826600-33847800	Weak transcription	Fetal Stomach	stomach
8	chr15:33827400-33877200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:33828400-33838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:33832600-33839800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:33832800-33833400	Weak transcription	Brain Substantia Nigra	brain
12	chr15:33833200-33858400	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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