Variant report

Variant	rs17236140
Chromosome Location	chr15:33804299-33804300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519827	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11856567	1.00[CHB][hapmap]
rs16971919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16972012	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17236182	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17817299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1821583	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196285	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41279200	1.00[ASN][1000 genomes]
rs41279202	1.00[ASN][1000 genomes]
rs6495130	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7163256	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7169155	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs978338	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33785200-33807400	Weak transcription	Brain Anterior Caudate	brain
2	chr15:33794800-33836200	Weak transcription	Aorta	Aorta
3	chr15:33795200-33812000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:33800000-33806400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:33800000-33807600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:33800200-33804400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:33802600-33805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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