Variant report

Variant	rs6495130
Chromosome Location	chr15:33810168-33810169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10519823	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519827	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10519837	1.00[CHD][hapmap]
rs11856567	1.00[CHB][hapmap]
rs16971919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16972012	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17236140	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236182	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17817299	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1821583	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196285	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41279200	1.00[ASN][1000 genomes]
rs41279202	1.00[ASN][1000 genomes]
rs4780134	1.00[CHD][hapmap]
rs7163256	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7169155	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7181036	0.81[EUR][1000 genomes]
rs978338	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv34041	chr15:33720726-33871487	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv34037	chr15:33732616-34049083	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33794800-33836200	Weak transcription	Aorta	Aorta
2	chr15:33795200-33812000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33808200-33812800	Weak transcription	Brain Anterior Caudate	brain
4	chr15:33809800-33811400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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