Variant report

Variant	rs16976278
Chromosome Location	chr18:40101032-40101033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11873683	0.83[ASN][1000 genomes]
rs11878015	0.83[ASN][1000 genomes]
rs11878107	0.83[ASN][1000 genomes]
rs1864727	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes]
rs3924665	0.82[ASN][1000 genomes]
rs3924666	0.82[ASN][1000 genomes]
rs57398776	0.95[ASN][1000 genomes]
rs6507484	0.83[ASN][1000 genomes]
rs7232445	0.82[ASN][1000 genomes]
rs7232896	0.83[ASN][1000 genomes]
rs73470806	0.83[ASN][1000 genomes]
rs8099032	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40089800-40113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:40099000-40101600	Enhancers	Fetal Intestine Large	intestine
3	chr18:40099200-40102600	Enhancers	Fetal Intestine Small	intestine
4	chr18:40100400-40101200	Enhancers	Duodenum Mucosa	Duodenum
5	chr18:40100400-40101200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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